Garra rufa (doctor fish): 141294148
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Entry
141294148 CDS
T11039
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a isoform X1
KO
K06757
neurofascin
Organism
grf Garra rufa (doctor fish)
Pathway
grf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
141294148 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
grf04515
]
141294148 (nfasca)
Cell adhesion molecules [BR:
grf04515
]
Immunoglobulin superfamily
L1 family
141294148 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
Bravo_FIGEY
V-set
Ig_5
C2-set_2
Ig_DSCAM-DSCAML_C
Ig_VEGFR-1-like_5th
V-set_CD47
BiPBP_C
Dicty_REP
Med13_C
Motif
Other DBs
NCBI-GeneID:
141294148
NCBI-ProteinID:
XP_073682340
LinkDB
All DBs
Position
20:complement(18321693..18383243)
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AA seq
1366 aa
AA seq
DB search
MWTQERWAALAVLSIILLLSKVVAPIEVPLDPKIQQELKQPPTIVKQSLKDYIVDPRDNI
IIECEAKGTPVPTFQWRRNGKFFNVGKDPRVTMRSRSGTLEIKSGGRPEEYEGEYQCFAS
NDFGTAISNKILLRVSKSPLWPKEVLEPVVVREGESLVLPCNPPPGLPPPETFWMDSSIM
PIMQDKRVSMGLNGDLFFSNVRAKDANTDYSCNARFEFTHTIQQKNPYTLKVQITRNVPE
VQPMFLSPKGLSSSKTVLRGEQLLLECIAAGVPTPNIDWFKKGGELPSKKVKIENFGKTL
RIFNVSDEDSGDYNCMASNKIGSIRHSVEVQVKAAPYWLDKPTNLVLAPDESGRLVCRAR
GNPNPTIQWLMNGEPIESSLPNPNRDVIGDTIRFPSVQIGSSAVYQCNASNEHGYLLANA
FVNVLDMAPRMLGPKNQLIKVIENNRTFLDCPYFGSPLPLLRWFKNGLGSGLDGGHYKLY
HNGTLEIKQARPEDQGTYTCVASNILGKMENQVRLEVKERTRIVRAPEHVTESRGSTVRF
DCRVKHDPSLPATVTWLKNDKPLSFSWIGRLRKDDESMTIYNVNPEDGGTYTCIAKTEID
EDSASARLTVTEDDISSTSNRSASAGRPDPPQDLELSDPSARSVRLTWVPGNENNSPVTH
FLVQFEEDRWEPGRWQNLSTFDGNQNSVNLQLSPFVNYQFRVIAINAVGQSQPSLPSARY
QTSGAPPDVFPSVLKGWGSKKNNMEITWQALKNTERNGPNLRYVVSWRRKDTEEEWNNIT
TTRTKHVIHNTDTYVKYEIKIQAVNDFGRSTESNVVIGYSGEDKPSAAPTELRVSKINST
KVNVHWVPVDPSTVNGEFKEYKLYYWREASLLKGLKVNKTKLHKGFFTTAEHPSGILTEL
FPYSKYKMYMVVANREYEGPQSNTVEFYTKEGEPGVPEYFKIERHTDVFHLKWDKPLEPN
GVLIGYTLQYHTVNGTQAGERKAQSFPPNVTKYIMNLPNRFTRFKFYLAARTQVGAGEVY
AMESPPFNNEGTPDTDSTVVAVNFTDALMFETPPPPPPLSTDPIPTILTPEPTTPAPTTV
APPKPTTTSTTTTTTTTTTTTTTTTTTSTTTTTASTTVLPVRPKSPKTVDWKMLAPNVKI
WNLTVDANNDYANVSWKHNFSVDSSEFVLEFTLDSNGSMKSIQVNHQPPIKLAGLVAGAK
YRLRVYSHEHNSISSDYVTFETGRAYKEQEDIATQGWFIGLMCAVALLVLILLIVCFIKR
SRGGKYPVREKKDLPLDPVDHKDQDGSFDYHSDEDNKPLQGSQTSLDGNVKESDDSLVDY
GEGGDGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgtggacgcaggagcggtgggcggcactggcagtgttgtcaattatcttgctgctatca
aaggtggtggctccaatcgaagtcccactggacccaaagatccagcaagagctgaaacag
ccccccaccattgtgaagcagtcactaaaggactacattgtggaccccagagataacatc
atcattgaatgcgaagccaaggggaccccagtgccaacgtttcaatggcggcggaatggg
aagttcttcaatgttgggaaggacccacgggtgaccatgcggagtcgttccggaacactg
gagatcaaaagtggcggaaggccggaagaatatgaaggagaataccagtgcttcgcctcc
aatgattttggcactgcgatttccaacaaaatcctactacgagtgtcaaagtctccgctg
tggccgaaggaggttctggagccggtggttgtgcgtgagggggaatcactcgtcctgccc
tgcaaccctcctcctggtctcccccctcctgaaaccttctggatggacagctccattatg
cccataatgcaggacaagagggtgtcgatgggcttgaacggtgacttgttcttctccaat
gttcgggctaaagatgccaacaccgactacagctgcaacgctcgcttcgagttcacacac
accattcagcagaagaacccctacacccttaaagtgcaaataacacgtaatgtaccagaa
gtccagcctatgtttctatctccaaagggcttgtccagctccaaaacagtgctccgaggg
gaacagcttcttctggagtgtatagcagctggagtcccaactcctaacattgattggttt
aaaaaaggaggagagcttccatccaaaaaagtcaagattgagaacttcgggaaaactcta
cgcatcttcaatgtgtccgatgaggactctggcgattacaactgcatggcgagcaacaag
attggcagtattcgccattccgttgaagttcaggtcaaagcggctccctattggctggat
aagccgaccaatcttgtgcttgcccctgatgagagtggacgattagtttgtcgtgccaga
gggaaccctaatcccactatccagtggctgatgaatggggaacctattgaaagttcactg
ccaaacccaaaccgggatgttatcggtgataccatcaggttcccatctgtccagatcgga
agcagcgcagtttaccaatgcaacgcctccaatgagcatggttatctattggccaatgct
tttgtcaacgtcctagacatggcaccacggatgctaggtccaaagaatcagctgatcaaa
gtcattgaaaacaacaggaccttcctcgactgcccttactttggctcaccgcttccttta
ctgcgctggtttaagaatggcctaggcagtggtctggatggtggtcattacaagctatac
cacaatggtaccttggagattaaacaagcccggccggaagaccaaggcacttacacttgt
gtagccagtaacattctgggcaagatggagaatcaagtgcgcctggaggttaaagagcgc
acaagaatagtgcgggcacctgaacatgtcacagaatccagaggaagcacggttcgcttt
gactgtcgagttaaacatgatccatcccttcctgctacggtcacatggctaaaaaatgac
aagcctctaagctttagctggattggccgactcagaaaggatgatgagtctatgactatt
tacaatgtcaatccagaagatggaggcacctacacttgcattgccaagactgaaatagat
gaggactctgcttcagctcgccttacagttacagaggatgacatctcgtccacctcaaat
cgtagtgcctctgcaggtcgacccgacccacctcaggatcttgagctctctgacccttca
gcacgtagtgttagactcacctgggtgcctgggaatgaaaacaacagtcctgttacacat
ttcctcgtccagtttgaagaggacaggtgggagccagggaggtggcagaacctgtctaca
tttgatggcaaccaaaactcagttaacctgcagctgtcacctttcgtcaactaccagttc
agagtgattgcaatcaatgctgtgggccagagtcaacccagcctcccgtctgcacgctat
cagaccagtggagcccctcctgatgttttcccgagtgttcttaaaggctggggaagcaag
aagaacaacatggagatcacgtggcaggcacttaagaacactgaaagaaatggcccaaac
ctgcgatatgtggtctcatggagaaggaaagacactgaggaagagtggaataacataact
acgaccagaacaaagcacgttattcataatacagacacttatgtcaaatatgagatcaaa
atacaggctgtgaatgactttggacgcagtactgagtcaaatgtagtcattggttattct
ggagaagacaaaccgtccgctgcaccaacagagctcagggtttcgaagatcaacagcacc
aaagtaaatgttcattgggtgcctgtggaccccagcactgtgaacggagagtttaaagag
tacaagttgtactactggcgggaggccagcctcttaaaaggcctgaaagtgaacaagaca
aagttgcataaaggtttcttcaccacagccgaacatccctctggcatcctgacagagctt
tttccatatagcaaatacaagatgtacatggtggtggctaatagagaatatgagggaccg
caaagcaacactgtggagttctacaccaaggagggagagccgggtgtcccggagtacttt
aagattgagaggcacacagacgtgtttcacctgaagtgggacaagcccctagagccaaac
ggtgtcctgattggatacacactccaataccacacagtgaatgggacgcaagcgggagaa
aggaaggcccagagttttccacccaacgtgacaaagtacatcatgaatctgcctaaccgc
ttcacacggttcaagttctaccttgcagctcggacgcaggtcggagcaggagaagtgtat
gccatggagtcgccacctttcaataatgaaggcaccccagatactgactctacagttgta
gccgttaactttacagatgccttgatgttcgaaactcctcctcctccccctcccctctct
accgacccaatcccaacaatacttaccccagaaccaaccacaccagcccctacaactgtt
gctccgcccaaacctactactacttccactactactactactactactactactacaact
accacaactactacaactacttccaccactactacaacagcttccaccacggttcttcct
gttcggcccaagtctcctaaaacagtggattggaaaatgctggccccgaatgtaaagatc
tggaatctgaccgtggatgctaacaatgactatgctaacgtcagctggaagcacaacttc
tccgttgacagcagcgagtttgtgctagagttcacactggacagtaatgggtcgatgaaa
agcatacaagtaaaccaccagcctcccattaagctggctgggttggtggccggggccaag
tatcggttgcgggtgtattcccatgagcacaactccatcagcagcgactatgtcacgttc
gagacaggcagagcctacaaggagcaggaagacatcgctactcagggctggttcattggg
ctgatgtgtgccgtcgcactattggttctcatcctgctcatcgtttgtttcatcaagagg
agtcgtggaggcaaatacccagtgagagagaagaaagacctccccttagatcctgttgac
cataaagaccaagatggctcatttgactatcacagtgacgaagacaacaagccactgcag
ggcagccagacgtccctagacgggaacgtaaaagaaagcgacgatagtctggtggactat
ggcgaaggaggagacggccagttcaatgaggacggctctttcattggccagtacacagtt
aagaaggacaaagaggagacggaaggaaacgagagctcagaagccacgtcacccgttaat
gccatctattctctggcatag
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