Garra rufa (doctor fish): 141295313
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Entry
141295313 CDS
T11039
Symbol
ubr1
Name
(RefSeq) E3 ubiquitin-protein ligase UBR1 isoform X1
KO
K10625
E3 ubiquitin-protein ligase UBR1 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141295313 (ubr1)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141295313 (ubr1)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
UBR box proteins
141295313 (ubr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRT6_C
WHD_UBR1
zf-UBR
ClpS
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
141295313
NCBI-ProteinID:
XP_073682624
LinkDB
All DBs
Position
21:complement(31776329..31814731)
Genome browser
AA seq
1735 aa
AA seq
DB search
MAESLDGVQLSTKWQEASNRGAAILSYLGEQVPLIFCLEAEPQQGEEEQKVEERLLYPLE
CFLFGEDPCVGLEKLQQYNSSSSAQQCGRVFKEGETVYSCRDCAIDPTCVLCIECFQKSV
HKSHRYKMHASAGGGFCDCGDLEAWKTGPCCSQHDSGTSVATETDECVMDPGLRERAQML
FHLLLRYTTDMLVWEETKELSDELKPKVKEDTYFCVLYNDEHHSYDHVIYTLQRAIACDQ
NQAQIYTALIDKEGRRAVKRGTLRICQQAKENIRRNSEHIIQKPLRVEILHTAVMAHQTF
VLRLGAWFQKIIGYSVGLREVFCQVALEPDYDNNKLCLISRLMLHDAKLYKGARKVVHEL
IFSSLLMDTEYKRQFAMKFTEHYKQLQEDFISDDHQRNISVTALSVQIFTVPTLARQLIE
EGNVIEVIIDTVMDMMREHLDGNHFHFQGHNPEKFFRVQVIFHDLRYILISKPSVWTETL
RVKFLEGLCVFLRFLCYMQGMEEVKRQFGQHVEVEPEWEAGFTLQMQLRHILAMFQDWCT
SDERVLLLAFQECHRALMSCTNQPFRSEPTDSYMCKQILHARPYKVSQEPVSIHLPVSRL
LAGLYVLLCQTGAIQYLPDFVDPVQLNFTELAEQPLRCVVLAAQVCADMWRRNGLSLVSQ
VYYYQDVKCRDEMFDKDVIMLQIAASKMDPNHFLMLVLLRFELFDIFNGNSSNKDQEVLK
QWNRLTEEMLYLIIIIIGERYVPGISHVTKEDMTMREVIHLLCIEPMAHSSLVKSLPENE
SHETGLETVISKVAIFKKPGVSGHGLYELKKECLKEFNPFFYHYSRPQHSKAEEAQKKRR
TQEGSDKALRPPVPPPFCPAFSNIVYLLCCDVFIHILRRVFQKAVEDRSNRWTEPMIQRA
LHLVGQALLEEKTQLESNTAEEVTFDFSLKAQKTGSNMGKSLFHFLTKMKSLPSLEAQND
MITWNLQMFEVVKCLREKSGPVASFSVDHSKSEECVQDKEKAERKRKAEAAKAHRQKIMA
QMSAMQKNFIESNKMLYDNVPESSSQSDAATSLESFRMDVDESRVAVGPQQGVCCADWEA
QICILCQEEQEVQAQAPAMVLTACVQRSTVLTQNRGKTVSPKVGSYPLFMPPDLAVGTHT
GSCGHVMHATCWQKYFEAVQNTTRNRLHADLIIDLENGEYMCPLCKSLCNTVIPLIPVEP
SKLNYESAELVGQHLTLERWIQIMSSRIKGLRGTWETDNNSEEAVEEATALFDESQADFR
SILSFGVQEPPKFSRSITEMLGVCATTVHRVGLQTAPNDLCPYVPVMSWNTCAYTIQAIE
NMLQEEGKALFGSLQNRQLSGLKALVQFSAAQKLKSSQAVIQKHFADMLAALVPVPNVEN
TPSILEVDFFHLLVGLVLSIPALYQEEAVDLQPSAVSTAYNQLYLLRLITMGHMLQVLLA
SHDCAVIGGPQEGDEAQAAAELFSIVSQHTDRLKAGVSGFSVEGVKRGVLPFLRCAALFF
NCLTGVAPPEELSGTAESPESQLPLLCSYLSLPSNLFQLFQDHRDVVTTLIARWCENTAI
SKALKGEMQIIRYPRKRNRLIDLPEDYSVLLNQASHFKCPNSSDDERKHPTLCLLCGVML
CAQSPCCQEQVNGEEVGACTAHAAVCGAGVGMFLRVRECEIILMASKTRGSPYPAPYLDD
YGETDPQLGRGNPLHLCPERYRKLLNMWQQHCVLEEIARSLEVLNVMFPFEWQML
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atggcggagtcgctggacggtgtacagttgagcacgaaatggcaggaggcttcaaacaga
ggggctgccatactcagctatttgggggagcaggtcccccttattttctgcctggaggcg
gagccacaacaaggggaggaggagcaaaaggttgaggaacgcctcctgtaccctctggag
tgcttcctttttggggaggacccctgtgtcgggctggagaagctacagcaatacaacagc
agctcgtcagctcagcaatgtggacgtgtctttaaagagggcgagaccgtctactcctgc
agggattgtgcaatagatcccacctgcgttctctgcatagaatgcttccagaagagtgtg
cacaaaagtcatcgctacaagatgcatgcctcagcaggaggaggtttctgcgactgtgga
gacttggaggcttggaagaccggaccctgctgctcccaacacgactctggcacttcagtt
gctacggaaacggatgagtgtgtgatggatccaggccttcgagaaagggctcagatgctg
ttccacctgctgctgcggtacacgacagacatgctggtttgggaagaaaccaaggaacta
tcagacgagctgaagccaaaagtgaaggaagacacctacttttgtgtgctctataacgat
gaacatcactcatatgaccacgtcatctacacacttcagcgagcaatcgcctgtgaccag
aatcaggctcaaatctacactgcactcattgacaaggaagggcggagagcagtaaagaga
ggtactctcagaatctgtcaacaagccaaggaaaatatcaggcgtaactcagagcacatt
atccagaaacctttgcgggtggagatccttcacactgctgtgatggctcatcagaccttc
gtcctcagactcggcgcatggttccagaagatcattggctattcagttggcctcagggag
gtgttctgccaggtggctttggagccggactatgacaacaataaactctgcctgatcagt
cgactcatgctgcatgacgccaaactttataaaggagcccgcaaggtcgtccacgagtta
attttcagtagtttactgatggacacagagtacaaaaggcagtttgccatgaaattcaca
gagcactacaagcaacttcaagaagactttatcagcgatgaccatcaaaggaacatctca
gtcacagccctatctgtgcaaatctttactgttcccactttggccaggcagttgattgag
gaaggaaatgtcatcgaggtcattatagatactgtaatggatatgatgagggaacatctg
gacggcaaccacttccacttccagggccacaatcctgagaagttcttccgggttcaagtt
atctttcatgacctcaggtacattctaatcagtaagccctctgtgtggactgagacattg
agggtgaagttccttgaaggtttatgcgtctttcttcgcttcctttgttatatgcagggg
atggaggaggtgaagaggcaatttggtcagcatgttgaggtggagcccgagtgggaggca
ggatttaccctccagatgcagctacgccatattctcgccatgtttcaggactggtgtact
tctgacgagagggttctgttgttggcctttcaggagtgccacagagctctaatgtcttgc
accaaccagcccttccgcagcgagccgacagacagctacatgtgcaagcagatcctccat
gcacggccgtataaagtctcccaggagcctgtctccatccatctgccagtctccagactc
ctggccggtttgtatgtgctgctgtgccagactggagcaatccaatacctccctgacttt
gtggatcctgtgcagctgaacttcactgagctggcagagcaacctctacgctgtgtagtg
ctggcagctcaggtgtgtgccgacatgtggcgcagaaacggcctgtcactcgtcagccag
gtgtattactatcaggatgttaagtgcagggatgaaatgtttgataaggatgttatcatg
ttgcagattgctgcttccaaaatggaccccaatcatttcctcatgcttgttcttttgaga
tttgaactttttgatatttttaatggcaactcctccaataaagatcaggaagtactgaaa
cagtggaataggttaacagaggagatgctctatttgataatcatcatcataggtgaacgg
tacgtacctggaatcagtcatgtaactaaggaagacatgactatgagggaagtcatccat
ctgctttgtattgaacccatggctcatagcagcctggttaaaagcctgcctgaaaatgaa
agccatgaaacagggcttgaaacggtcatttctaaggttgctattttcaagaaaccagga
gtatcaggccatggcttgtatgagctgaaaaaggaatgtctgaaagagtttaaccccttc
ttctatcattattccagaccacaacatagtaaggcagaagaggctcagaagaagaggagg
acccaagagggcagtgataaagccctccgtcccccagtgcctcctcccttctgtccagca
ttctcaaacatagtgtatctgctctgctgtgacgtcttcatccatattctgagaagagtt
ttccagaaagcagtggaggaccgctctaaccgatggactgagcctatgatccagagggca
ctgcacctcgtaggccaggctctgttagaggaaaaaacacagttggaaagcaacactgct
gaggaagtgacttttgatttcagtctgaaagcacaaaaaaccggttcaaacatgggcaaa
tctttgttccacttcctgactaagatgaagtctttaccctctctggaagctcagaatgac
atgatcacctggaacttacagatgtttgaggtggtgaagtgtcttcgggagaaatctggt
cctgttgcttcattttctgtggatcacagcaagtcggaggagtgtgttcaggataaggag
aaagccgagcggaagaggaaggctgaagctgctaaagcccacaggcagaagatcatggct
cagatgtcggccatgcagaagaacttcatagagtccaataagatgctttatgacaatgtg
ccggagagctcgagtcagagcgacgctgccacatctctggagagcttcaggatggatgtg
gatgagagcagggtggccgtggggcctcagcagggtgtttgttgtgcagactgggaggct
cagatctgcatcctgtgtcaggaggagcaggaggttcaggctcaggcaccagccatggtc
ctcacagcatgtgtgcagagatctactgttcttacccagaaccgtggaaagacagtctcc
cctaaagtaggcagctatcccctgttcatgccccctgatctggctgtgggaacacatact
ggcagctgtggacatgtgatgcacgccacctgctggcaaaagtattttgaagcggtgcag
aacaccactcgaaatcggctgcatgcagatctgatcatagacctggagaacggcgagtac
atgtgtccactctgcaagtccctctgtaacacggtcatcccactgatccctgtggagccc
agcaagctcaactatgagagtgccgagttagttggtcagcatctcactcttgagcgctgg
attcagattatgtcttctcggatcaaagggctgagaggtacatgggaaacagacaataac
agtgaggaagcggtggaggaagcaacagcactttttgatgagagtcaagctgatttcaga
tccattctcagttttggagttcaagagccgccgaagttctctcgcagtatcacagagatg
ttgggtgtctgtgcgaccacagtgcacagggtgggattgcagacggctcccaatgacctg
tgcccgtacgtgcctgtcatgtcctggaacacgtgtgcctacaccatccaggccatcgag
aacatgttacaggaagaagggaaggctctttttggatccctccagaacagacagctctct
ggactcaaagcgttagtgcagttttcagctgctcagaagctgaagagcagtcaagctgtc
atacagaagcattttgctgatatgttagcagccctggtacctgttcctaatgtagaaaac
acaccatctatattagaagtggatttctttcatctactggtggggctagttctgtccatc
cctgcattgtatcaagaagaagctgtagacctgcagccttcagcagtcagcacagcatac
aatcaactctacctgctgcgcctgatcactatgggacacatgctgcaggtcctgctggcc
tcacacgattgtgctgtgattggagggccacaggagggtgatgaggcccaggctgcagcc
gaactcttctctattgtgtctcaacacacggacaggttgaaggctggtgtgtctggtttc
agtgtagagggtgtaaagagaggtgtgcttcccttcctgcgctgtgctgcactcttcttt
aattgccttacaggagtggcccctccagaggagctgtccggtactgcagaatcacctgaa
agtcagctgcctctgctgtgtagttacctctccttgccctccaacctgtttcaactgttt
caggatcacagggatgttgtaaccaccttaatagcgaggtggtgtgaaaatacagccata
tccaaagccctcaaaggtgaaatgcaaatcatcaggtatcctcgtaagagaaacaggcta
atagatcttccagaggactatagtgtgttgctcaaccaagctagtcattttaaatgccca
aactcttcagatgacgagcggaagcacccgactctttgtttgctatgcggggtcatgctg
tgtgcgcagagcccctgctgtcaggagcaggtgaacggggaggaagtgggcgcctgcaca
gctcacgccgccgtttgtggggctggagtgggaatgtttctcagggttcgagagtgtgaa
atcatcttgatggccagtaagacacgaggcagtccctatccagcaccttaccttgatgac
tatggagaaacagaccctcagcttgggcgtggaaacccgctgcacttgtgtccagagcgc
taccgcaagttgcttaatatgtggcagcagcactgcgtcctggaggaaatcgcccgcagt
ttggaggtcctcaacgttatgttcccctttgagtggcagatgctttga
DBGET
integrated database retrieval system
