Garra rufa (doctor fish): 141295328
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Entry
141295328 CDS
T11039
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
grf03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141295328 (srrm1)
Spliceosome [BR:
grf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
141295328 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
141295328
NCBI-ProteinID:
XP_073682643
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All DBs
Position
21:25411181..25427553
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AA seq
959 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDDDKREKESKERAQSKSPKRRKSRSPVKRDRKS
SPSRSPRRKPSPAASPPSSPPNHKEEPKQEPDQSESSKPEPLVQEASSTSDLVGDIKPDS
VSEAVKESSPDKTSKSEDRPKPRDRDREKDGRRDRPRHRSRSPRSRRRPRSRSRSFSPRR
RTSPRRRISPRRRSPPRRGPPSRHRRSRSPVRRRRSRSRSSSASSSSRSPHKRPGKRGSA
TPPRKLPRRSDPSSPSRRRGRSPSGPDTSPSAMKHRPGGRNDSRSPSPKPRRSDVSESEE
DKVGKGSTADSVQQRRQYRRQNQQSSSDSGSSSSSEDEGSRRQNRGAGARNGEIRRRRSH
SPASPRRRHRDASPRKRRSPSPAGRRHRSPSPARRRRSPSPPPRRRSPSPPHRRFTPPIQ
RRYSPSPPPPQKRRSPGSPKRRRSPSPMSKRRGSPSPMSKRRGSPSPMSKRRGSPSPMSK
RRGSPSPVSKRRGSPSPLSKRRGSPSPVSKRRGSPSPVSKRRGSPSPASKRRASHSPVAK
RRASPSPMAKRRGSPSPVSKRRGSPSPVAKRRGSPSPVAKRHSSRSPKRSRGSSPVKRRT
PPSSASPPPRHRRISPNPPAAQRGRDTRSPPPAHSTRVSSSPPARYGPSASSPQRQRRQT
SPSHSTRPIRRVSRTPEPRKSQRGSQSPQPVRRQVSRSPSASPPPPAPTAHKRPASVSPS
RSASRSPPPPAKKNSSVSPSPSPNKNSDGEGSKKKKKKKEKKHKKEKKHKKHKKQKKEKS
GEEKSGGAAGGHGQEAEPDSDQKKESESEVEDSLDDLEKQLREKALRSMRKAQMSPSQS
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagtgcggagcaagataaccgcttcagcaacaaa
cacaagaagctgttgaagcaactaaagtttgcagaatgtctggagaagaaggtggatatg
accaaggtcaacttggaagtggtgaagccctggataactcagcgagtgacggagatcctt
ggctttgaggatgatgtggtcatcgaatttgtcttcaaccagctggaggaaaagaatccg
gatgggaagatgatgcagatcaatttgaccgggtttctgaatgggaagaacgctcgagag
ttcatgaaggacctctggccgctgttgcttagtgcacaggagaacatcgctggtatcccg
tctgccttcctggagcagaagaaagaagagatcaaacagagacagatcgaacaggagaaa
cttgcctctctgaaaaaaatagatgatgataaaagagagaaggagagcaaagaaagagct
cagtcaaaaagccctaaaaggaggaagtctcgctcccctgtgaagcgtgaccgtaagtct
agtccctctcgatcacctcggcgaaaaccgagcccagctgcttcgccgccttccagtccg
cccaatcataaagaagaaccaaagcaagaaccggaccagtcagagagctccaaaccagag
ccactcgttcaggaggcttcctctactagtgatcttgtgggcgacatcaagccagactct
gtgtctgaggctgtgaaagagtcatctccagataaaacgtccaaatctgaagacaggccc
aaacccagagacagggacagagagaaggatggccgtagagatcgtccacgccaccgctct
cgttcacctcgatctcgtagacgacctcgatcccgctctaggtcgttctctcctcgtcgc
agaactagtcccaggaggcgaatctctccgagacgtaggagccctcctagacggggacca
ccctctagacatagacgtagccgttcacctgtccgcaggcgtcgctctcgctcccgctcc
tcctctgctagttcctcttctcggtcaccccataagagaccagggaaacgtgggtcagct
accccacccagaaaacttccacgtcgctcggacccttctagcccttcaagaagacgaggt
cgtagtccttcaggaccagacacaagcccttcagctatgaagcacaggcctggtggaaga
aacgactctcgatctccttctcctaaacccagacggtctgatgtatcagagtctgaggag
gacaaggtgggcaaagggtcaacagcagattctgtccagcagcgacgtcagtatcgcaga
cagaatcagcagtcctcttcagactctggttcatcctcttcttctgaagatgaagggtca
aggaggcagaatagaggggcaggtgccagaaatggagaaatcagaaggcggcggagccat
tcacctgcatcaccacggagacggcacagagatgcatccccaagaaagagacgttctcca
tcacctgctggtcgtagacatcgttcgccttctcctgctcgccgtcgcaggtcgccctct
cctcccccaagacgcagatctccatctccacctcaccgacgcttcactccccctatccag
cgcagatacagtccctcccctcccccacctcaaaagagacgctcaccagggtctcctaag
cgcagaaggtctccatcacccatgtccaaacgtagagggtctccatcacccatgtccaaa
cgtagagggtctccatcacccatgtccaagaggagagggtctccttcaccgatgtcaaaa
cgtagagggtctccttcccctgtttcaaaacgaagagggtctccttcacccttgtccaaa
cgcagaggttctccttcaccagtgtccaaacgtagaggatctccatcacctgtgtccaag
cgtagagggtctccttcacctgcgtccaaacgcagagcgtctcactcacctgtcgcaaag
cgcagagcatctccctcgccaatggctaagcgaagagggtctccttcacctgtgtccaaa
cgtagaggatctccctcacccgtagccaagcgtagagggtcaccttctcctgtggccaaa
cgtcattcctctcgatccccgaaacggagtcgaggcagtagcccagtaaagagacgtact
ccgccctcatctgcttcacccccaccccgccaccgtagaatctctccaaatccccctgca
gcccaacggggcagagacactcgctctcctccccctgcccacagcactcgagtgtcttcc
agtcctccggctcgatatggaccctctgcttcatccccacagagacaaagacgtcaaacg
tccccgtctcatagcaccagacctattcgcagggtttcccgcacaccagagccacgcaaa
tctcagagaggttctcagagcccccagccagtaaggaggcaggtttcacggtcaccatct
gcttctcctcctcctcctgctccaacggctcacaagcggcctgcttcagtctcaccttct
cgctctgctagccgctctccacctccacctgccaaaaagaacagcagtgtttctccgagc
ccatcacctaacaagaactcggatggagaaggtagtaagaagaagaaaaagaagaaagaa
aagaaacacaagaaagagaagaaacacaagaagcataagaaacagaaaaaggagaaaagt
ggagaagaaaagagtggaggggcggctggaggacacggacaggaagcagagccagactct
gaccagaaaaaggaatcagagagtgaagtagaagacagtttggatgatctggagaagcaa
ctacgtgagaaagctctccgctcaatgaggaaggcccagatgtctccatctcagtcctga
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