Garra rufa (doctor fish): 141295604
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Entry
141295604 CDS
T11039
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
grf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141295604 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
141295604 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141295604 (pabpc4)
03041 Spliceosome [BR:
grf03041
]
141295604 (pabpc4)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141295604 (pabpc4)
mRNA cycle factors
Stress granule specific factors
141295604 (pabpc4)
Spliceosome [BR:
grf03041
]
Complex C
Other components
Complex C specific factors
141295604 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
141295604
NCBI-ProteinID:
XP_073682952
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All DBs
Position
21:complement(25309923..25328350)
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AA seq
637 aa
AA seq
DB search
MNAATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAEMGAKAKEFTNVYIKNFGEDMDDPRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYE
KHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRT
TYYAPNQLTQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRANIRHLAPNASTQGPRGIP
TGAQRVGGSGQPMGPRPAMGVTAPRAMPPYKYATAIRNTQPQVVQPITLQQAQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHE
SLRSKVEEAVAVLQAHQAKKDATQKVGVTTATVAATS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagcgacggcggggagttatccgatggcttctctctatgtgggcgacctgcac
cctgatatcacggaggctatgctgtatgagaaattcagtccggccggcccggtgctgtcc
atccgcgtgtgtcgggatatgatcacgcggcgctcgctgggctatgcctacgtcaacttc
cagcagcctgcggacgcggaaagagctttggacacaatgaacttcgatgtggtcaaagga
aagccgatcagaatcatgtggtcacaaagagatccgtcacttaggaaatccggggttgga
aacgtctttatcaaaaatcttgacaagtccattgacaacaaggccctatacgacaccttc
tctgcttttggaaacatcctgtcctgcaaggtggtgtgtgacgagaacggatctaagggt
tacgcttttgtgcattttgaaactcaggacgcagccgaccgcgccatcgagaagatgaat
ggcatgttgctgaacgaccgcaaggtgtttgttgggcgtttcaagtccaggaaagagagg
gaagcagaaatgggtgccaaagccaaagaattcaccaatgtttacatcaagaacttcgga
gaggacatggatgatcccagattgaaagagctctttgataaatatgggaaaacgctgagc
gtgaaggtcatgactgaccccacagggaaatctcgtggatttgggtttgtgagctacgag
aagcatgaggatgctaacaaagctgtggaagagatgaacggtacagagcttaacggtaag
acggtgtttgttggccgagcacagaaaaagatggagagacaagcagaactcaagaggaag
tttgaacagctcaaacaggaaagaatcagcagatatcagggtgttaacttgtatatcaag
aatcttgatgacactatcgacgatgagaaacttcgtaaagagttctctcctttcggctcc
attaccagtgccaaggtgatgctggaggacggcaggtctaaaggttttggctttgtgtgt
ttctcctcacctgaggaggccacaaaggccgtgacagagatgaacgggcgtattgtgggc
tccaaaccactgtatgtagccttggcccaacgtaaagaagaacgcaaagctcatctgacc
aaccaatacatgcagcgtatcgctggtatgagggccatgcctgccaatgctatcatcaac
cagttccagcctgctggtggttactttatgccagctgtgccacaggcccaaaacagaaca
acatactatgcaccaaaccagctcacccagatgcgtccgaaccctcgctggcagcagcag
ggtggcagaggtcagggtggcttccagggcatgcccagctccttgcgccagccagggcct
cgtgccaacatacgccacctggcacccaatgcttccacccaaggcccacgcgggatcccc
acaggtgcacagagagtgggaggcagtggccaaccaatgggtccccgccctgccatgggg
gtgacggcccctcgtgccatgcccccatacaagtatgccaccgccatacgaaacactcag
cctcaggttgtgcagcccattactctgcaacaggctcagccagctgttcatgtgcagggt
caggagcctctcactgcctccatgttagctgccgcccctcctcaggaacagaaacagatg
cttggtgagcggttgtttcctctcatccaggcaatgcacccaagtctagctgggaagatc
acaggaatgctgcttgagatcgacaactctgagttgctgcacatgctggagtcccatgag
tctctgcgctccaaggtggaggaggctgtcgcagtgcttcaggctcatcaggccaagaaa
gatgccacacagaaagtgggagtcaccaccgcgactgtcgccgcaacatcatga
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