Garra rufa (doctor fish): 141295739
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Entry
141295739 CDS
T11039
Symbol
jmjd1ca
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141295739 (jmjd1ca)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
141295739 (jmjd1ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
FYVE
zf-UDP
C1_2
Motif
Other DBs
NCBI-GeneID:
141295739
NCBI-ProteinID:
XP_073683106
LinkDB
All DBs
Position
21:27996440..28125118
Genome browser
AA seq
2604 aa
AA seq
DB search
MAVELVGKRCLYVSGGESLEPAGISHWSWRAGVIRATTDSSALTVCVHWDGEQSAERKWR
RLREECEVVLLEQELVWATKRTGTNGSSSGQEKRRLQPALKFRPLIGQSCVGGWTVVEFI
SDRQLEFYTEKEELQPFEDEVDSGNPAVRDDPTLQEQVQAWLKQNQFQNILQQGASSLKG
LRVKVFRQESKTQWLSGVITHHDQNNKTVAVMTDQVREIANVDPSLVQIMLLDDITHSSL
MGDNSKRKSHITKINRNFLGTGSISNNTTTNDQVCSSRPVQQQSEISTQNCSMEEDEKEG
TRVEKRSDEGRDSSKFKNSNGERKRRKEDEEKDDKQRNRCGLKRLKAGSVSDLSENSDSE
NSSCRVQDSSLDSGSKRQLKQRYTSKRPLDCEVHPSHRGGEPSPNQLGESETPKIGKTSP
SDSPSASCNGAFRSTDAPESGALVSGGKSEEKRDGVITEIEDRSEGASREDSEAVSAVSA
LLASQESEQLVSMEDTCVLLHASPLECEGAEGEHEMSTNDPEVRGSEFTHAEPKGSEFNQ
SEVKRSEFAHSEASSDTAVPVEEEPRGAPPRSPVIPCNKNEDGDSKQACSPAGVNAEYGS
VRTLEATHKSSVHTSSCSSPEIISKPQTVRETPRQKQSTPLEMGLLKDGTPLVKSMDRTL
SALKVPPNPVLIQTPSPTPNRSRTPTYTPPCTPNRTPTPDKSSKSPFVVDRKEPFTIYRD
PALVRTELESHPTYIQPPHTPPNPKHHLKTPSPSSSSPSLTPASSHSKLLSPSPHPAHLS
PIPLHSQPPLCSLSTPHSTIPHPHLLPSLLPALSPSAALLSGHPRMGALGLSHHPLALTG
NPSLLGQSSGAAPMAHLGLYPLLWPPFPNGAHSYPGLGLQASKWTHPDSAGISDSSVRSN
TPSPWISQPTPVTNADGQGLQPPLPIRPSSADPQRVSRTTQHCTSSSKTTEELDRRAVTE
STLIHTHLKSEQERLRTAAGKNGQTYCPVALELSPSRTKQPIVVYDLTGERPIRYQEENR
RILQESSEVAPFTAKLGSDREPRFPRNPTSALSSKEREREMDRDRDVHAFRHTLPPRPQS
AHPTPTLTPSSYYASLSNSLENKPPHRRVPASKELYERLSASNTVAPGLTSSSSQVSMRA
RPPPLVKRHHEKEEGLLGKITEQLAHKASSMEAAEVAALERRGPGSSLISVSSSSRNVPL
LHRAPIFHPPAPAIVVSKDSGHARLSPPTLTPIQPMSLPGKGQKQQRPPTLLPELKHVAL
DGKRLVPEKATMPLQAYDTHWGGVMFGREKVSGGHTTNGCVVKPQSATASVIVRPTNHTH
TTISYTVSDSSVSQMHCSHIRPLESLSNPHSKEGSVQHKRGVLWTPLDTVHPINMTAQKG
DLSMPINMTTKSINTAHPLTNMNATRSRIDLIAEHCKRRDSGAVQPKMESSPTSFCTSRD
FPHLKKHRAGLAAAESRHNTLTVQPQNTTHPSNVMKHTSYLSNSGYGSCNTLTTHTHASE
IEKESVFNTSSSECLRLASGTSSPVPTTKQGLLANEQAPASAVTNQSQSGQNNYHKLKKA
WLTRHSEQDRGSTASQTVDGTKTAVTLTNTNTPVPIKQEVNGLVDNGEDKDPSLDSRKSK
ILNKKRTQENRKSGLEDGKSNSNALGFNSEDKKSVMADEKPVTVGKKSSLEDVKPVLDRN
GKLEGKESFVEDKKSIEKRSTPVHMKSEKEKRGEKRPLEFSGDSESGGDSGNESESGGSG
WRFKRQPKSSFKIKNEQKKKVEEEEEEEEEAKPNGTLQSAKDKPQQRLANSNGIPRSVLK
DWRKVRKLKQTGEAFLQDDSCAEIGTNVQKCRECRLDRSRKTQEPAISPVFCRFYYFRRL
SYSKNGVIRVDGFSVSEQTDEEAVTVWTGSSEDEEDKKRRKMDLETSKSVLGLIGDSFCQ
LVKTEDTAITWVKKDTQIMWKRAVRGVREMCDACEATLFNMHWACHKCGFVVCMDCYKAR
EKKKAKDKELYAWVRCVKNQPHDLKNLMPTQIVPEAVLANMQRSVHSMREKFGIPSHCSC
TDSKTHNPSTATTNGLSPLSDRDQSDLKSRQIPDQQKNSHVTVKAHTEKREKAGCDAVEA
HSRKSSSPEQGSTLRDLLTSTAGKLRLGATGGAFAPVYNLSEQVAQNTRMPNILDDIIAS
VVENKIPATKMARVGLNQDSLPEGEVGQRPEGVKLDESPLADPHGIVPHDWLGNHRLLWL
KDHRHQGNQRLFKENWTQEQPVLVSGLHKSLNANLWKPEHFSREFSSLHSDLYNCRDGSV
TNSKVKEFWDGFEDVSKRPKSDKGDSVVYRLKDWPSGEEFLALMPARYHDVMKSLPVPEY
TDPEAQLNLASHLPSFFIRPDLGPRLCCAHGVTTCPEQDFGTSNLHVEISDTMSILVYVG
VAKGNGAPSKAGALKLLEGEVLHESVKKRLKDPNEMPGALWHIYMSKDLQKIQEFLQKVA
AEQQTEADPEADSDSEWDGDADPLRESGWYLSPRLRQRLQDEYGVESRTLLQFHGDAVMI
PAGALHQVMNLHSCIQVNVDFVSPEHAHNSYYLTQELRPLKDQVNYEDKLQVKNIFYHSV
KDAIATLRNHLKEKITDDVKQEES
NT seq
7815 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagctggtggggaagcgctgcctgtacgtgagcggcggagagtcgctggag
cccgcgggtatctcgcactggagctggagagccggagtcatccgagcgaccactgactcg
tctgcgctaacggtgtgtgtgcactgggacggcgagcagagcgcagagaggaagtggagg
agactccgagaggaatgtgaggtggttttgttggagcaggaactcgtctgggccaccaaa
agaaccggcacaaacggcagcagcagcggccaggagaagaggagactgcaacccgccctg
aaattccggcctctgattggtcagtcatgcgtaggaggctggacagtggtggagttcatc
tctgacagacagctggagttctacacagaaaaggaggagctccaaccattcgaggatgaa
gtggacagtggaaatccagctgtgagagatgatccgactctgcaggaacaggtccaggcc
tggctcaaacaaaaccaattccagaacattcttcagcaaggtgcttcttctctaaagggc
ctgagagtgaaagtgttcagacaggagtccaaaacccagtggctgtctggagtcatcaca
catcacgatcagaacaacaaaaccgtagctgtcatgactgaccaggttcgggagattgcg
aatgtagatccgtcactggttcagattatgttgctagatgatatcacccactcctcgctg
atgggagacaactcaaaacgcaaatcacatatcaccaagatcaacaggaattttcttggc
acaggaagcatatcaaacaacactacaacaaatgaccaggtgtgcagctccaggccagtg
cagcagcagtctgagataagcacacagaactgcagcatggaagaggatgaaaaagaaggc
acgagggttgaaaagaggagtgatgagggaagagattcttccaaatttaaaaacagcaat
ggtgagagaaaaaggaggaaagaagacgaggaaaaagatgacaagcagagaaatagatgt
ggtttaaagaggttgaaagcaggcagtgtgtccgacctgtcagagaacagcgattctgaa
aattccagctgcagagtgcaggattcatctttggattcaggatcaaagagacagctgaaa
cagcgttacacttcaaagagaccattggactgtgaggttcacccctcccatagaggcggg
gaaccttcgcccaaccaattaggagagagtgagactccgaaaattgggaaaacctctccg
tctgattccccaagcgcatcctgcaatggagcatttaggagcacagatgcaccggagtct
ggtgctcttgttagtggtgggaaatcagaagagaaacgagatggagtaataacagaaata
gaggacaggagtgagggggcgtctcgggaggactcggaggccgtgtctgccgtgtctgca
cttctggcgtcccaagaaagtgagcagctggtctccatggaagacacatgtgtgctgcta
catgcatcacctctggagtgtgaaggagcagagggtgagcatgagatgtcgacgaatgat
ccagaggtcagagggtcagagttcacccacgcagagcctaaggggtcagagtttaaccaa
tcagaggtcaagaggtcagaatttgcccattctgaggccagtagtgacactgcagtccca
gtagaagaggagcctagaggagctccacctcgctctcccgtcataccttgcaacaaaaat
gaggatggggattctaaacaggcttgttctccagcaggtgtaaatgcagaatatggatct
gtgaggacattggaagctacccacaaatctagtgtgcacaccagttcttgctcctctcct
gagatcatatctaaacctcagactgtacgggaaacacccaggcagaagcagagtacacct
ctagagatggggctgttgaaggacggcactcctctggttaaatctatggacagaactctt
agcgcccttaaagtgccacccaatccagtcctgattcagaccccttctccaaccccaaat
cgttccagaaccccaacgtatactcctccctgtacacctaatcgcactcccactcctgac
aagtccagcaaaagtcccttcgttgtggacaggaaggagcccttcacgatctacagagac
cctgcactagtcaggacagagcttgagtcccaccccacctacattcagccccctcacacg
cccccaaaccccaagcaccaccttaagacgccttctccctcctccagctctcccagcctt
actcctgcttcctctcatagcaagctactgagtccctcccctcaccctgcacacctctcg
cccattcccctccactcccagcctcccctttgctccctgagcacaccccactcaacaatc
cctcatccacacctcctcccctccctcctgcctgcgctgtccccgtctgccgcactcttg
tctggacatcctcgtatgggagccttgggactttcccaccatcctttagcccttacaggt
aacccgtctctcctgggccagagctctggtgcagctcctatggcacatcttggtctctat
cccctcctgtggcctcctttccctaacggagcccatagctacccgggactgggcctgcaa
gcatccaaatggacacaccccgacagtgctggcatctctgacagcagcgtgaggagtaac
actccaagcccttggatatctcagcccacccccgttactaatgcagacggtcaaggtttg
caaccgccactgcccatccgaccctccagcgcggaccctcagagagtgtctagaaccact
caacattgtacatcctcctccaaaaccacagaagagctggatagaagagctgtcactgag
agcacactcatccacactcacctcaagtctgaacaggagcgtctccgcacagcagcaggc
aaaaatgggcagacttactgcccagtcgcccttgagttgtccccaagtcgaaccaaacag
ccaattgttgtttatgatctcacaggcgagagacccatccgctaccaggaagagaaccgc
cgcattcttcaggagagcagtgaggtggcaccgttcactgctaaactgggctcagataga
gaaccacgattccctagaaaccccacgtctgctctttcctccaaggagagggagagagag
atggacagagacagagatgtgcatgcattcagacacactctacctccccggccgcagtcg
gcccatcccaccccaacccttactccgagcagctactacgcatctctgtctaacagcctg
gagaacaagcctccacatcgcagagtgccagccagcaaagaactctatgagagactcagt
gccagcaacacagttgcccctggcttaacttcctccagctcacaggtctcaatgagagcc
aggcctcctcctcttgttaaacgccatcatgaaaaagaagaaggtcttttgggaaagatc
acagagcaactagctcataaagcatcttccatggaagcagcagaggtagcagctttggaa
agaagagggccaggctcttctcttatttctgtgtcctcttcttcacgcaatgtgccttta
ctccatcgtgcccctattttccaccctccggcacctgccattgtggtttctaaagactct
ggacatgccagattgtctccgcctactctcacacccattcagccaatgagcttgccagga
aaaggtcagaagcaacagaggccacccaccttgttgcctgaactcaaacatgtcgcctta
gatgggaaaagacttgtgccagagaaagcaacaatgccgttacaagcctacgatacccat
tggggtggagttatgtttggcagagagaaagtgagtggtgggcatacaacaaatggatgt
gttgtcaaaccacagtcggccactgcgtcagtcattgtacgtccaacaaaccacacacat
acaacaataagttacacagtgtctgacagctcagtttcccaaatgcactgcagccacata
agaccactggaaagtttgtccaatccacactctaaggagggcagtgttcagcataaaaga
ggagtcctgtggacccctctggatactgttcaccccatcaacatgaccgctcaaaaggga
gatctcagtatgcccataaacatgacaactaaatctattaacactgctcacccgttaaca
aatatgaatgccacacgctctaggatagatctaattgcagaacactgcaagaggagagat
agtggagcagttcaacccaagatggagtcctctcccacctctttttgcacttctagagac
ttccctcacctgaagaaacacagagctggactagctgctgccgaatctagacataacaca
cttacggttcagccccaaaacactacacatccttcaaatgttatgaaacatacctcttac
ctctcaaatagcgggtatgggtcttgcaatacactcactacacatacgcatgcttcagaa
atagaaaaagagtcggtattcaacactagttcttctgaatgtctccgactggcatcaggg
acttccagtcctgtgccaacaaccaaacaaggtttgctggccaatgagcaggcacctgct
tcagccgtaaccaaccaatctcaatccggtcagaacaactaccataaacttaaaaaagcc
tggctgactcgccattctgagcaagacagagggagcacagcctcccaaacagtagatggc
actaagacagctgtaactttgaccaacacaaacacccctgtgccaatcaaacaggaagtt
aatggactggtggataatggggaggacaaagatccctccctagacagcagaaagtccaaa
atattgaacaagaagagaactcaagaaaacaggaagtctggtttagaggatggaaagtct
aatagtaatgctctaggtttcaactcagaggacaaaaaatctgtcatggcagatgagaag
ccagtgacagtgggcaagaagtcttccttggaggatgttaaacctgtcttggacagaaac
ggcaagctggagggtaaggagtccttcgtggaggacaagaaatctattgaaaaacgatca
accccggtacatatgaagtctgagaaggagaaacgaggtgagaaacggccattagagttt
agcggtgacagtgagagtggaggcgactcaggcaatgaaagcgagagtggcggttcagga
tggaggtttaaacgacagcccaagtcttcttttaaaatcaagaatgaacagaagaagaaa
gtagaggaggaggaggaagaagaggaagaggccaaaccgaatggaactttgcaaagtgca
aaggataagcctcaacagagactcgctaacagcaatggcatccctcgctctgtgctgaaa
gactggaggaaggtgaggaagctcaaacaaactggagaagcgttcttacaagatgactcg
tgtgcagagatcgggaccaatgtgcagaagtgcagagagtgtcgcttggatcgatcacgt
aaaactcaggaacctgctatctcacccgtcttctgtcgattttactacttccgacgtctg
tcgtacagtaagaacggtgttatccgtgtggatgggttttcggtatctgagcagaccgat
gaagaggccgttacagtgtggacgggcagctcagaggacgaggaggacaagaagaggaga
aagatggaccttgagacatcaaaatctgtcctcgggctcattggagacagcttctgccag
ctcgtaaagacagaggacactgctatcacctgggtcaagaaagacactcagatcatgtgg
aagcgagcagtgaggggtgtgagggagatgtgtgacgcatgtgaggccactctcttcaac
atgcactgggcttgtcacaaatgtggctttgtggtttgcatggactgctacaaagccaga
gagaagaagaaagccaaagataaggaactgtatgcctgggtaagatgtgtgaagaaccaa
ccacatgacttgaagaatttaatgcctactcagattgtccctgaagcagtattggcaaac
atgcagaggtctgtgcactcaatgagagagaagtttggaatcccatcccattgttcctgc
actgacagcaaaacccacaaccccagcacagccactaccaacggactctcaccactttca
gacagagatcagagtgacttgaagagccggcagatcccagatcagcagaagaactcgcat
gtcacagtgaaagcgcacactgagaaaagagagaaggcagggtgtgatgctgtggaagct
cacagtaggaagtcctcgagccccgaacaaggatcaacattgcgtgaccttttgacctcc
acagctgggaagttacgtcttggggccactggaggtgcctttgcaccagtttacaacttg
tccgaacaggtagcccaaaacactcgcatgcccaacatcctggatgacatcattgcttct
gtagtagaaaataagattcccgctacaaagatggccagggtggggctcaatcaggattcg
ctgccagaaggggaggtggggcagcggccagagggggtgaagcttgatgaaagcccattg
gctgatccccatggcattgtccctcacgattggctaggaaaccaccggctgctttggctc
aaagatcaccgtcaccaaggcaaccaaagactgttcaaagagaactggacacaagagcag
ccagtgctggtgtccggattgcacaagagtttgaacgccaatctgtggaagcctgaacac
ttcagccgtgagttctccagccttcatagtgacctctacaactgcagagatgggagcgtc
acaaactccaaagtcaaggagttctgggatggttttgaagatgtgtcaaagaggcctaaa
tctgataaaggggattcagtggtgtatagactgaaagactggccatcaggagaggagttt
ttggccctcatgcctgccagatatcatgatgtgatgaagtctttgcccgtaccagagtac
acagacccagaggctcaactcaacctggcctcacatctgccctccttcttcattcgaccc
gaccttggtcctcgcctctgctgcgcccacggtgtaacaacatgtccagaacaagacttc
gggaccagtaatctacatgttgaaatctcagacaccatgagtattctggtatatgtcggg
gtggccaaaggaaacggagccccatccaaagcaggggcattaaagctcttggaaggagaa
gttttgcatgagagtgtaaagaaacgactgaaagaccctaatgagatgccaggtgctctg
tggcacatctacatgagtaaagatctacaaaagatccaggagtttctacaaaaggtcgct
gctgagcagcagactgaagcggatccagaggcagactcagactcagagtgggacggtgat
gccgaccccctgcgcgaaagcggctggtatctgagccccaggctgagacagaggctacag
gatgaatatggcgtagagagccgcacactcctccagttccatggagatgctgttatgatc
cctgctggagccctgcaccaggtaatgaatctgcacagttgcatccaagtgaatgtggac
tttgtgtcccctgaacatgcgcacaactcctattacctaacccaagagcttcgccctctc
aaagaccaagtgaactatgaagacaaactccaggtgaagaacatcttttatcactctgta
aaagatgctatagccacattgcggaaccatttgaaggagaagatcacagatgatgtgaaa
caggaggagtcctga
DBGET
integrated database retrieval system
