Garra rufa (doctor fish): 141295845
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Entry
141295845 CDS
T11039
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141295845 (nrde2)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141295845 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
Suf
SURF2
TPR_12
TPR_19
AP3D1
Motif
Other DBs
NCBI-GeneID:
141295845
NCBI-ProteinID:
XP_073683225
LinkDB
All DBs
Position
21:24574912..24597294
Genome browser
AA seq
1151 aa
AA seq
DB search
MALFPSFSGLSSNNSSTGDRADLEWLSNQSFSTEDALKTHQRSTERVKLEAEEPASPREQ
KRKEREDSHGRSKKKKKDKKKKHKKKSRDNSESSGSESDTVYPSDLLKKENADREEAQVR
VSETFMWLDDLQTPTDSPFCIDRRADRANWEYKSLYRGDIARYKRKGASCLGLNAKTQAV
NWNDGGPEKKRVDKKPERYFCPSTRQLLRSDSQPALPILSKGNAVSSDSYIKLSACTEEQ
GSSTQAPVSWVNPLGIYDHGTSLWLEGKGKPEVKGDQQDVEAEGSSSSKSSTFLSARVEE
FNRKLRENPSDIKLWLDFVHFQDEMAFGSGSFFAASDSDDGDMKKMSFRAVLEKKLSIVD
KAVESNPANVDLKLEKLRLCKELWEPATLQKEWKKLVFIHPNSAPLWRKYLLFTQSHFST
FSVSKVNSVFGKCLSTLSAVQDGSMVSHPPLPGTQEDLLDIFLQQCHFLRQAGHTEKAVC
LFQALLDFTFFKPESVKNLLTRQQVDFFEPFWDSGEPRIGERGARGWKAWMLQQEKGGWV
IPPEPDDDDEEEQDDSEIKDKTWPKWKIWLDVEASREANHWLPWRPDKTKGQSEEDCEDP
DRQVLFDDIGPSMIRVDRPDLQLQLILSFLQFLGLPGPSGRFSLSSSNILLDDLTFLEEG
PDTERPLTFYDLPIAVTCAVGHMTFLNDCRRQAGLCKAGEEFLQNVLQQTLPLVSTKDQA
AITLCWLQYEKLKVLRCLRSGNKRRLKAQGKRSKRLAKRLLKEPDNRGSLALWREYAHLE
WLLGNLEEARKVFDTALGMGVTRGLNDPVLCNLCFLYAQLEVEQATNNGTVPTSKAVYIL
TKLAEGAAYTPFVDQISPVTILKARKTYEQTLLSCLPEQSTGAPKKLHRMSSLVGCFGLF
QYLTMGIDAADAVYNQAIQKLISSNLSSEVTDGSLRRPKAFPDWEFVAVQHVALLRHHAN
TNVFPLSRLRLALTDALSLLPSSASLWQLYLQTENRYHSAGRARRFFHSAIKKTDSVVPY
LFAITAERRLKQMLDSVQRSRLPGEALPALPNNGLCNRIRCLFENATATEHGAHCPLLWR
MYLNFMVCDGNLERGSGIFYKALQAVPWVKGLYMDAVQLFPERVQEFLDLMTEKELRLRV
PMEEVDILLED
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggctcttttcccgtccttttctggactgtcaagcaataatagctctactggggataga
gcagatctagaatggctgagtaatcagagcttcagcacagaagatgctttaaagactcac
cagcgctcaacagagagggtgaaattggaagcagaggaaccagcaagcccaagagagcaa
aagcgtaaagagagagaagacagccatggcagatcgaaaaagaaaaagaaagacaaaaag
aaaaaacacaagaagaagagcagagataactcggaaagcagtggatctgaatcagacaca
gtttaccccagcgacctgctaaaaaaggagaacgctgacagggaggaagctcaagttcgg
gtgagcgagacctttatgtggctggatgacctccagacccccactgactcccccttctgt
atcgacagaagagctgaccgtgccaactgggaatacaaatccctctataggggagacata
gccaggtataagaggaagggagcctcatgcctggggttaaacgccaagacccaggctgtg
aactggaacgatggaggcccagagaagaagcgcgtggacaagaaacccgagcgctatttc
tgtccttccacccgtcagctgcttcggtcagatagtcaacctgctttgcccatactctct
aagggtaatgccgtcagctctgattcctacatcaaactctcagcctgcactgaagagcag
ggctcttccacccaggcacctgtatcatgggtaaatccactgggcatctatgaccatggt
acctctctgtggctggagggcaagggtaaaccggaggtaaagggagatcagcaggatgtt
gaggctgaagggagcagcagcagcaaaagcagcaccttcctgagtgcacgggtggaggag
tttaacaggaagctacgggagaatccttcagacatcaagctgtggctggactttgtacac
ttccaggatgaaatggcctttggttctggttcattctttgctgccagtgacagtgacgat
ggtgacatgaagaagatgtcttttcgtgccgtgctggagaagaagctgtccattgtggac
aaggcagtggaaagtaaccctgccaacgtggacctgaaactggagaaactccgcctgtgc
aaagaactatgggagcctgccaccctgcagaaagagtggaagaaactagtgttcatccat
ccaaacagcgctcctttatggaggaagtatcttctcttcacacagagtcatttcagcact
ttctcagtgtcaaaggtcaacagcgtgttcggaaagtgtttaagcacactcagtgcagtc
caagatggcagtatggtgtctcaccctccacttccaggcacccaggaagaccttttagat
atatttctacagcagtgccatttcctacggcaggcgggtcacaccgagaaagctgtgtgt
cttttccaagcccttctggacttcactttcttcaagccagaaagtgtaaaaaacctgctt
actagacaacaggtggatttttttgagcctttttgggacagtggagagcccagaattggg
gaacgtggggctcgtggatggaaggcttggatgcttcagcaggagaaaggaggatgggtg
attccacctgagccagatgatgatgacgaagaagagcaggacgactcagagatcaaagac
aagacctggcctaagtggaagatctggttagatgtggaggcatcccgagaggcaaaccac
tggttgccatggagaccagataaaaccaagggccaatcagaagaggactgtgaggaccct
gacagacaggtcttgtttgatgatatcggcccatctatgattcgtgtggacagaccagat
ctccagctgcagttgatcctgtcattcctgcaattcctaggtctgcctggaccttcgggg
aggttctctctctcttcctcaaacattctactggacgatctgaccttccttgaagagggt
ccagatacggagcgaccactgaccttttatgacctcccaatagctgttacttgtgcagtg
ggtcacatgacatttctaaatgactgcaggaggcaggcagggctgtgcaaagcaggggaa
gagtttctccagaacgttctacagcaaactctcccactcgtctccacaaaggatcaagct
gctattactctctgctggctccagtatgagaaactaaaggtgctgagatgtttacgcagt
ggaaataaaaggcgcctgaaggctcaggggaagcgtagtaaacgtctagcaaagcgactg
ctaaaagagccagataacaggggcagcctggcactttggagagagtatgcccatctggag
tggcttctggggaatctggaggaggcacgcaaagtatttgacactgctttgggcatgggc
gtgactagaggtcttaatgatcctgttctctgtaacctctgctttctttacgcacagtta
gaggtagagcaggccacaaacaatgggacagtccccacttccaaagctgtctacattctc
actaaattagctgagggtgctgcctacacacctttcgttgaccagattagcccagtgacc
atactgaaagccagaaagacctatgagcagacactgttgagctgtttacctgagcagagc
actggagctccaaagaaactccataggatgtccagcctggttggatgttttgggcttttt
cagtatctcacaatggggatagatgcagcagatgctgtgtacaatcaggccatccaaaaa
ctgatttctagcaacttgagttcagaagtgacagatggatctctgaggagacccaaggcc
tttccagactgggagtttgttgctgtccagcatgtagcactgctgcgccaccacgccaac
accaatgtgtttcctctctcccggctaagactggcacttacagatgccctctccttactg
ccctccagcgcttcattatggcaactctaccttcaaacagagaaccgctatcacagcgca
ggccgtgcccgcaggtttttccacagtgcaataaagaaaactgacagtgttgtgccatat
cttttcgccattactgcagagcgacgactcaaacagatgctggactctgttcagaggtct
cgtcttcctggagaagccctgccagccctcccaaataatggtctttgcaaccgtatccgc
tgtctgtttgaaaacgctacagcaacagaacatggagcccactgtcctctgctctggagg
atgtatctgaacttcatggtgtgtgatgggaatcttgagaggggcagtgggatcttctat
aaggccctacaggcagtgccctgggtaaagggcttgtacatggatgcagtgcagctattt
cctgaacgtgtgcaagagtttttagaccttatgactgagaaggagttacgtctgagagtg
cccatggaggaggtggacatcttactggaggactag
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