Garra rufa (doctor fish): 141296067
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Entry
141296067 CDS
T11039
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
grf Garra rufa (doctor fish)
Pathway
grf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
141296067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141296067
Membrane trafficking [BR:
grf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
141296067
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
141296067
NCBI-ProteinID:
XP_073683447
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Position
21:10681574..10692305
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AA seq
837 aa
AA seq
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MKVFTPVLVFQKIPSGKGRDKFSIQCLECFGKNLYIGTKEGVIEYLTVNNTSGEESLSVR
EVGKRQMGRSGAISQLTAVPVLNHLLVLWDGSVTVINMFSLELIPALKKIQNVSFFHVSE
SAFQTDSVELIAASTKRKTVSVYKVCVDRWECVKQVALPQEPVVLAAHGTCLCVATCDRY
FLHDYQSQTTLDLFPHNLGKQNIIANKCEKGEFILNGPGCLGMFVMKNGTSQHPPVQWPD
GVVDAAVHFPYVLALQNQTIHIYSILDQQLKQTVPLQSAKSLISTEECVFVVADKEIHRL
SPVPLEDQIQELVKSQRVDEALTLLERLQDLLPKDSYKDLHKNVVCTSGLIKFYREAFVE
AKELFIKGELDPREVISLYPAMPVMSEDFTPQTTAVSNAKDLWTLSREDWPTFQQYLSFL
DDFLREVRPTEQGQMCSQDIDSALFKLYLEQGEHEKLDQLVSSQNNCNLQTCVPDLEEHK
RFFTLGLLYQSQGQHFNAIQTWVKIVEEQIEDTSHISVFKHIVNTLSNLEHKPIIWKFVD
WVLQRDQEAGVLIFTKVHTSSHVTFAPEEVLTILTNYPVAITLYLEYLVNELHSKEEKYH
TMLITSYVKRILQSIEDDCNNETSKQEMRHKLQQLLWQSSFYNADAIYDQITPSLLNVER
AILLGKSGKHRKALQVLVNEEKDQHAAENYCWRTSAGQDRKFTQGIFLTLLQIYLASSHH
VTTAVDLLNKNAASFDLASVLRVLPDSWSLQLVLRFLCESLRGTVHDKRMRGLEMSLAKV
ETLRHKHVWMEATHEKIRVDRGFVCHSCQKRLTGPEFLRRPTGELTHISCHGGESGH
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcttcacccctgtgctagtctttcaaaaaataccctctgggaaaggcagagac
aaattcagcattcagtgtttggagtgttttggtaaaaacctctatatagggaccaaagag
ggagtcattgagtacctcactgtaaataacacgagcggtgaagaaagcctttcagtgcgg
gaggtggggaagagacagatgggccgaagtggagcgatcagccagctgacggcggtccct
gttctgaatcatctcttggttctctgggatggttcggtcacggtgattaacatgttctcc
ctggaactcattcctgccctgaagaaaatacagaacgtgtcattcttccatgtcagtgag
tcagcttttcagactgattctgtcgagctcattgcagcttcgaccaagagaaaaacagtg
agtgtttacaaggtgtgcgtggacagatgggagtgtgtgaaacaggtggctctgccgcag
gaacctgtggttctggctgcgcatgggacgtgtctgtgtgtggccacttgcgacagatat
tttctccatgattatcagagccaaaccaccctcgatcttttcccacataacctgggaaag
caaaatatcattgccaacaaatgtgaaaaaggagaatttattttaaatgggcccggatgt
ttgggcatgtttgtgatgaagaatggcacttcgcagcatcctcctgtacagtggcctgat
ggcgtggtggatgccgcagttcatttcccatatgtgctagctctacaaaatcagactatt
catatctacagcattctggaccaacagctgaagcaaactgtccctttacaaagtgccaaa
tctctcatctcaacagaagaatgtgtttttgttgttgctgacaaagagattcatcggctg
tcaccagttcctttggaggatcagattcaagagctggtaaagagtcagagagttgatgaa
gccttgacacttttggagaggcttcaagatctcctgccaaaagattcatataaggatcta
cataagaatgtcgtctgtacatctggattaataaagttctacagagaggcttttgtggaa
gcaaaagagctttttattaaaggtgaactagacccgagggaagtcattagcctttatcca
gctatgcctgttatgagtgaagactttacacctcagacaacggcagtcagcaatgccaag
gacctgtggacgttaagtcgagaagattggccgacatttcaacaatacctaagctttttg
gatgacttcttgagagaagtcaggccaacagaacagggccaaatgtgttctcaggacatc
gactcagcactttttaagctgtatttggaacaaggtgaacatgaaaaactggaccagctt
gtatcgtcgcagaataactgtaacctccaaacatgtgtacctgacttggaagagcacaaa
aggtttttcacacttggattgctctatcaaagtcaaggccagcatttcaatgcaattcag
acctgggttaaaattgtggaggagcaaattgaggacacctcacacatcagcgtattcaaa
catatagttaataccctctcaaatctggaacataaacccatcatctggaaatttgtagac
tgggttcttcagagagaccaagaggctggagtactgatttttacaaaggtgcatacaagc
agccatgttacatttgcaccggaagaagtccttaccattctcaccaactacccagttgct
atcactctctacttggaatatttagtcaacgaattacacagcaaggaggaaaagtatcat
accatgctcatcacatcatatgtcaagcggatattgcagtcaattgaggatgactgcaac
aatgaaacaagcaagcaagagatgagacataaactacagcaattactttggcaatcttcg
ttctataatgcggatgccatatatgaccaaataacaccctcacttcttaatgtggagaga
gcaattttgctcgggaagtctggtaaacacagaaaggccctgcaggttttggtcaatgaa
gaaaaagaccagcatgctgctgaaaactactgttggaggacctctgctggtcaagacagg
aagttcacacagggaatatttctcaccctgcttcaaatctaccttgcgtccagtcatcat
gtgaccacggcagtggatctgctaaacaaaaacgctgcatcttttgatttagcaagtgtg
ttgagggtgctgccggattcctggtctctgcaactggtgctgcggttcctctgtgagtca
cttagaggaacagtacatgacaaaagaatgagagggctggaaatgagcctagccaaggtg
gaaaccctaagacacaagcatgtctggatggaagcaacgcatgaaaaaatcagagttgac
agaggatttgtttgccattcatgccagaagcgtcttacagggcctgagtttctgcgcagg
ccgacaggagagctgacacacatatcctgtcatggtggagaaagcgggcactga
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