Garra rufa (doctor fish): 141297267
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Entry
141297267 CDS
T11039
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141297267 (dhx8)
Spliceosome [BR:
grf03041
]
Complex C
Other components
Step II factors
141297267 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
TsaE
PhoH
ABC_tran
Flavi_DEAD
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
141297267
NCBI-ProteinID:
XP_073683758
LinkDB
All DBs
Position
22:complement(25322269..25335703)
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AA seq
1214 aa
AA seq
DB search
MAEIGEDELKQLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKHPSIDAFKSVLVKN
GADFTDSLVSNLLRLIQTMRPPAKTSTSKASHSVVKPKNEKDKLKELFPALCRPDNPTTR
TMLDEDDVKVAADAMKELEMFMPSVSSSEPSSSKHRSETSSKKKRRSRSRSRSRDRDRER
DRDRDRDRRRRHRSRSRSRSRSNDRDRRKRRSRWHSRSRSRSPARGDRDKDRDKDKDKGS
DRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRV
ANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQDTGEDLNPNRRRNVGGEGQEESAMRN
PDRPTNLNLGHAPEVEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGIL
PKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKER
REVKQAQREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGN
KASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAG
YTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGML
LRECLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFS
QYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEI
DTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSL
TIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTER
AYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGA
LDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQA
LADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIM
DRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQP
EWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYE
EPNAWRISRAFRRR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggcagagatcggggaagacgagctcaaacagctcgaatatttgtctttggtgtctaaa
gtttgtaccgaacttgacaaccatttgggaatcaacgataaggaccttgctgagtttgta
atcagtcttgctgagaaacatccatccattgatgcattcaagtcagtgctggttaaaaat
ggagccgatttcacagattcactcgttagcaatttgcttcgtctcattcaaaccatgcgt
cctcctgcaaaaacatctaccagtaaagcctctcattctgtggttaagccaaagaatgaa
aaggacaagctgaaagagctgtttccagctctatgcagacctgacaatcccactactagg
actatgctggatgaggatgatgtgaaagttgcagctgatgccatgaaagagttggagatg
tttatgcccagtgttagcagttcagaacctagcagcagtaaacacagatctgaaaccagc
agtaagaagaagcggaggagcagaagccgcagtcggagccgagatagagatagagaacga
gatagggatagggacagagacagacggagacggcatcgctctcgctcccgttccagatct
cgctctaatgatagagacagaagaaagcgcaggagccgctggcactctcgcagcaggtcc
aggagtcctgcacggggagacagagacaaagaccgagacaaagacaaagacaaaggctca
gaccgctggaaggacaaacatgtggaccggcccccaccggaggagccatctgtgggggat
atctacaatggcaaagtcaccagtattatgcaatttggatgctttgtgcagttagaaggc
ctcaggaaacgctgggaaggcttggtccatatttcagagcttaggagagaaggtcgggta
gcaaatgtggcagatgtggtcagcaaaggtcaaagggtcaaaattaaggtgctgtccttc
actggatccaaaacaagtctcagtatgaaggatgttgaccaggacactggtgaagatctg
aaccctaacaggaggagaaatgtgggtggtgaaggtcaggaagagtcggccatgaggaat
cctgacagacccaccaacctcaatctgggccatgctccagaggtagaggacgacacattg
gaacgcaaaagactcaccaagatctctgatccggagaagtgggaaatcaaacagatgatt
gctgccaatgtgttgtctaaggaggaattcccagactttgatgaagagacaggaattctg
cctaaagttgatgatgaggaggatgaggatttggagattgagctggtggaagaggaacct
ccattcctgagaggacacaccaaacagagcatggacatgagtcctgtcaagattgtcaag
aaccccgatggatctctctcccaagcagccatgatgcagagtgccttggccaaagagcga
cgggaggtaaaacaggcccaacgagaggctgaaatggactcaattcctatgggccttaac
aaacactgggtggacccactgcctgatgtcgacggcaggcagatagctgccaacatgagg
ggcataggtatgatgcccaacgacatcccagaatggaagaaacacgcctttggtggcaac
aaggcctcctatggaaaaaagactcaactttctatcctagagcaaagagagagtcttcct
atctacaagctcaaagagcagctcattcaggctgtccatgacaaccagatcctaattgtg
atcggtgagactggctcaggaaagacgactcagatcactcagtacctggctgaggctgga
tacactacacgggggaagatcgggtgcacacaacccagaagagtggctgccatgtctgtg
gctaaaagagtgtcggaggagtacggttgctgtttaggtcaagaggttggctacaccatc
cgttttgaggactgcacaagtcctgagactgtcatcaagtacatgacggatggtatgctg
ttaagagagtgtctgattgacccagatctgggccagtatgccattattatgttggatgag
gcccacgaaagaaccattcatacagacgtactctttggcctgctcaagaagactgtacag
aagcgaactgacatgaagctcattgtgacatctgccacgctggatgccgtgaaattctct
cagtacttttacgaagcacctatttttactatccctggtcgtacatatccagtggaagtt
ttgtacactaaagaacctgagactgactatctggatgccagtctgatcacagtcatgcag
attcacctcactgagcctccaggtgacatcttggtgttcctgacgggtcaggaggagatc
gacactgcttgtgagatcctgtatgaacgaatgaaatccctcggccctgatgtcccagag
ttaatcatccttccagtctactctgccctgcccagtgaaatgcagactaggatctttgac
ccagcaccacctggaagtagaaaggtggtcattgctactaacatcgcagagacttctttg
acaattgatggaatctactatgtggtggatccaggttttgtcaagcagaaggtttataac
tccaaaactggaattgatcagctagtggtcacccccatctcccaggcccaggctaagcag
cgagcgggcagagcaggaagaacaggccccgggaagtgctacagactctacacagaacgt
gcctacagagatgagatgctcaccaccaacgtacctgagattcagagaactaacttggcc
agcactgtactgtctctaaaggcaatgggcatcaatgacctgttgtcatttgatttcatg
gatgctccacctatggagacgctcatcacagctatggaacagctatacactctgggagca
ttggatgatgaaggtttgctcacacgcctcggtcgtaggatggctgagtttcctctggag
cccatgctttgtaagatgttgatcatgtccgtccatcttggctgcagcgaggagatgctg
accattgtgtccatgctctcagtacagaatgtcttctacagaccaaaggacaaacaagct
ttggcagaccagaagaaggctaaatttcaccagcctgagggagaccacctgactttgctg
gctgtctacaactcctggaagaacaacaagttttccaacccctggtgctatgaaaacttc
atccaggcgcgatctcttcgccgtgcgcaggatatccgcaaacagatgctgggcatcatg
gacagacacaagctggatgtggtatcatgcggtaaagccacggtacgtgtacagaaggcc
atctgcagtggtttcttccgaaacgctgccaaaaaggatcctcaagaaggttacaggacc
ctcatagaccagcaggtggtctacatccacccctccagcgcattgttcaatcgccaacct
gaatgggtggtgtaccatgagcttgtgttgaccaccaaggagtacatgagggaagtgacc
accattgacccaaggtggcttgtagaatttgctccagctttcttcaaagtctccgatcct
acacgccttagcaagcagaagaaacagcagcggttggagccgctttacaaccggtacgag
gaaccaaatgcctggagaatatccagagccttcaggcgacgctag
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integrated database retrieval system
