Garra rufa (doctor fish): 141297562
Help
Entry
141297562 CDS
T11039
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
141297562
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
grf04040
]
141297562
Ion channels [BR:
grf04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
141297562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
141297562
NCBI-ProteinID:
XP_073684079
LinkDB
All DBs
Position
22:40955650..41044693
Genome browser
AA seq
1122 aa
AA seq
DB search
MGSVSSAVCRHTEACEGHNVQRVSNPVVLGDGVIKAGHRETEAAASEVGWMTSVKDWAGV
MISAQTLTGRVLVVLVFALSIGALVIYFIDSSKPIESCQHFDKDYTLQIDMAFNVFFLLY
FGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQF
LNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQPLSYWECVYLLMV
TMSTVGYGDVCAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRK
HIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQG
SVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQY
HNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSYIKIEEDT
WQKYYLEGVANEMYTEYLSSAFVGLSFPTVCELCYVKLKLLLIAIEYKSDQRESSTLINP
GNHVKMQEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKRTKKSTYKRMHL
ACCVACGGAEHGCSCMSDSVASNMEVLHRGFPFSPVSLYDNTTTLRSLEEEQQSTLSPKK
KQRNGGMRTSPTCSPKIIRHDPLLVPGHDQMETMDENIKKYDSTGMFHWCPSKDIEKVML
TRSEAAMTVLSGHVVVCIFGDVKSALIGLRNLVMPLRASNFHYHELKPIVFVGSLEYLKR
EWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKECILASL
NIKSMQFDDSIGLLQANSQGFTPPGMDRSSPENSPVHGLVRQASITTGANIPIITELVND
SNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGA
TPELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALK
TYNMLCFGIYRLRDAHLGAPSQCTKRYVITNPPYDFELVPTDLIFCLMQFDHNAGQTRTN
LSTHSSYCPNKKSPSAHSIPSSARPGRSRSRDPRDKQKYVPL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcgttagcagcgctgtgtgccgtcatacagaagcgtgtgaaggtcacaatgtg
cagcgggtcagtaacccggtggtcctcggtgacggtgtgattaaagcgggtcatcgggag
acagaggcggcggccagcgaggtgggatggatgacctctgtgaaggactgggccggggtc
atgatctccgctcagacgctcacgggccgcgtgctggtggtgcttgtcttcgctctgagc
atcggagcgcttgtgatttacttcatagactcctccaaacccatcgaatcctgtcaacat
ttcgacaaggactacacattacagatcgatatggccttcaacgtgtttttcctcttgtac
tttggactgcgtttcatcgcagccaacgataagctgtggttctggctggaggtaaattca
gtggtggatttcttcaccgtcccgcccgtatttgtatccgtctatctgaaccggagctgg
ctgggattgaggttcttaagagccttgaggctgatccagttttcagaaatattacagttt
ttaaatatcttaaaaacaagcaactccataaagttggtgaatttgtgctcaatctttata
agcacatggctgaccgcagcaggcttcatacatttggtggaaaactcaggggatccttgg
gaaaacttccaaaattcccaaccgctttcctactgggagtgtgtgtacttactcatggta
accatgtccacagtgggttacggagatgtttgtgctaaaacaaccctgggccgccttttc
atggtcttcttcattctcggaggattggccatgtttgccagctacgttcctgaaatcata
gagttaataggaaaccgcaagaaatatggtggttcctatagtgcagtaaatggcagaaag
catatagtcgtctgcggtcacatcacgctggagagcgtctccaacttccttaaagacttc
ctacacaaggacagggatgatgtcaatgtagaaatagtttttctccataatatttcccct
aatcttgagctggaagccttattcaagagacacttcacacaggtggagttttaccaggga
tccgttctcaaccctcatgatctcgctcgagtcaagattgagtcggccgatgcctgtctg
atcttagccaataaatactgtgcagatcctgacgctgaagatgcatccaatatcatgagg
gtgatatccattaaaaactaccatccaaagatccgaatcattacacagatgctgcagtac
cacaataaggctcatcttctcaacatcccgagctggaactggaaggaaggcgatgacgcc
atctgcctcgccgagctaaagctgggcttcatcgcccagagctgcctggctcagggtctg
tccaccatgctggccaacctcttctccatgaggtcctacatcaagattgaagaagacaca
tggcagaagtattatttagagggagtagccaatgaaatgtacacggagtatctgtccagt
gccttcgtgggtttgtccttccccaccgtttgtgaactctgctatgtgaagctgaaactc
ctgctgatcgcgattgaatataaatcggaccagagagaaagcagtacgctgataaacccg
ggcaaccatgtgaagatgcaggagggaacgctgggcttcttcatcgccagtgatgccaaa
gaggtgaagagggcacttttctactgtaaagcttgtcacgatgacataacagacccaaaa
cggatcaagaagtgtggatgcaaacggaccaagaagtccacctacaagagaatgcatctg
gcatgttgtgtagcttgcggtggggcagaacatggctgctcgtgcatgtcagacagtgtg
gctagtaacatggaggttctgcaccgtggcttccccttctctcccgtgtctctgtatgat
aacacgaccactttacgctccttggaggaggagcagcagtccacactgtcgcccaagaaa
aaacagcggaacggaggaatgagaacgtcgcccacatgctcgcccaaaatcatcaggcac
gacccgttgttggtcccaggacacgatcagatggaaacaatggatgagaacataaagaaa
tatgattcgacaggaatgtttcactggtgtccatcaaaagacatagagaaggtcatgctg
actcgcagtgaggcggcgatgacagttttaagcggtcacgtggtggtttgtatatttggc
gatgtaaaatcagccctgatcggtctgcggaatctggtgatgcctctgagagccagtaac
ttccactatcatgaattgaagcccattgtattcgtgggctctctggagtacctgaagaga
gagtgggaaacgctacacaacttccccaaagtctccatcttacccggaactccattgagt
cgggccgatctgagagctgtcaacatcaacctgtgcgacatgtgcgtcatcctctccgcc
aatcagaacaacatcgacgacgcctctctgcaggataaggagtgtattctggcatctctc
aacatcaaatccatgcagtttgatgacagtattggactcctgcaggccaactcgcaaggt
ttcactcctcctggaatggatcgctcatctccagaaaacagtcccgtacatggattggtg
cggcaggcgtccataaccactggagcaaacattcccatcatcacagagctcgtgaacgac
tcaaacgtccagtttctggaccaggatgatgacgacgatcccgacacggagctgtacctc
acgcagccgttcgcttgtgggacggcgtttgccgtcagcgtcctggattctttaatgagt
gctacatacttcaatgacaacattctgactctgatccggacgctggtgaccggcggggcc
acaccggagctggagggtctgcttgcggaggagaacgcgttgcgtggaggatacagcaca
ccgcaaacacttgctaatagagaccgctgccgcgtcgcacagttggcgctttatgacgga
ccctttgctgatctgggggatgggggctgttatggtgatttattctgtaaagcattgaag
acgtacaacatgctgtgttttggaatctaccgattaagagacgcacatctgggagcaccc
agccagtgcactaaacgatatgtgattacaaaccctccgtacgacttcgagctggtgcct
acagacctgatcttctgcctgatgcaattcgaccacaacgccggccagacgcgcaccaac
ctgtccacccactccagctactgccccaacaagaagagcccgtccgcccactccatcccc
tcgtccgcccgaccgggacgcagccggagccgcgacccgcgcgacaaacagaagtacgtt
cctctgtaa
DBGET
integrated database retrieval system
