Garra rufa (doctor fish): 141297610
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Entry
141297610 CDS
T11039
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
grf Garra rufa (doctor fish)
Pathway
grf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
141297610 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141297610 (msh2)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
141297610 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
T3SS_needle_reg
Motif
Other DBs
NCBI-GeneID:
141297610
NCBI-ProteinID:
XP_073684132
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Position
22:complement(23255250..23266875)
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AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPEKPDTTVRVFDRNDYYTVHGKDAAFAAKEVFKT
NGVIKNLGSGNKRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKEHDWQISYKA
SPGNLTQFEEILFGSGGGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFSTKDIVQD
LNRLLKARKGETVSSAALPEMEKQIAMSCLQAVIKYLELLSDEANFGSFKITTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLINQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRHSSNLQDCYRVYQAVGQLPSLVLA
LERYSGKHQVLLHAAFVSPLNDLVSDFNKFQEMIETTLDMNQVEHHEFLVKPSFDPTLSE
LRENMDRLEKSMQAALNSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVVSFAVVSHAAPVPYVRPTILEKGSGRLIVKAARHPCVEAQDDVAFIPNDVTFRRG
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVSTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELANFPKHV
IANAKEKALELEEFQDISRAGEEAGPEAKKRCLEKQEGEKIIEAFLAKVKSMPVDGMSDE
AVKEELRKLKAEVIRQNNNFVNEIVSHSAKVKLTSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtccatggacagtgcatctgaacatggatttctg
aatttttatttttctatgcccgagaaaccagacaccacagtgagagtatttgatcgaaac
gattactatacggtgcacgggaaagatgcggcttttgcagccaaagaggttttcaagacg
aatggagtcatcaaaaacctgggctcaggtaataagaggttggagagtgtggtcctcagt
aaaatgaattttgagtcatttgtgagggacctgctgctggtcagacagtaccgagtggaa
gtttacaagaatgccagtaagagtagcaaagaacatgactggcaaatatcttacaaggcg
tctccaggaaacctgacccagtttgaggagattttatttggcagtggaggagggcctggg
gagggagctgccggtgtcgtcggggttcgtcttggcaccggagccgatggacagcgtgtt
gtcggtgttggctatgtggacagcaccctccggaaactcggcgtgtgtgaattcccagac
aacgatcagttttccaatctggaggctcttcttgtgcagatcgggcctaaagagtgtgtg
cttcctgggggagatgcagggggagaccttggaaaactcaaacaggtggtacagcgtggt
ggcattctgctcacagacagaaagaaatcagagttctctaccaaagacattgtgcaggat
ctgaatcggctactgaaggcccgtaagggagaaactgtgtccagtgctgcacttccagag
atggagaaacagattgcaatgtcttgtttacaagcagtcatcaaatacctggagcttctc
tcagatgaggccaattttggttcctttaagataaccacctttgacctcaaccagtacatg
cgtctggataatgctgctgtgcaggctctgaatctcttccagggttcatctgatgatgct
acaggcacacactctctggcagggcttttaaacaaatgtcgtaccccacaaggacaacgg
ttgatcaaccagtggatcaaacagcctctcatcgacaaaaacaagatagaagaaaggctg
gatcttgtggagacttttgtggaggactctgagctgaggaagagttgtcaagaagatctt
ctccgccgttttccagaccttaaccgaatggcaaagaagttccagcgccacagctctaat
ttacaagactgttacagggtctatcaagctgtggggcaattgccgagtctggtgctggca
ttggagagatatagtgggaaacatcaagtcctcctgcacgccgcattcgtctctcccctc
aacgacctcgtctctgacttcaacaaatttcaggagatgattgaaaccacactggacatg
aaccaggttgaacatcatgagttcctggtgaaaccctcattcgatcccaccttgagtgag
ctcagggagaacatggatcgtttggagaaatccatgcaggctgccttgaacagtgcagct
cgtgaacttgggctggaagcagcgaagactgtgaagctggaatccaacgcacagatcggt
tactttttccgagtcacttgcaaagaagaaaagagtcttcgcaacaacaagaaattcact
actttagatgttcaaaagaacggagtgcgatttactaacagtaagctgagctctttgaat
gaagagtacactaaaagcagagaagagtatgaggaggctcagaacgccatcgtcaaagag
atcatcagcatagcagcaggctatgtggatccagtacagactctgaatgaggtgatagcc
cagctggatgcagtggtgagctttgctgtggtgtcccatgctgctccagtgccttacgtg
aggcctacaatactagagaaagggtcagggagactcattgtgaaggcggcaagacatccc
tgtgttgaagcccaagatgacgtggctttcattcccaatgatgtcacctttagaaggggc
gaggagatgtttcatatcatcacaggtccaaatatgggtggtaaatctacatacatccgc
caagtgggtgtgatcgtgctgatggcacagattggctgttttgtaccatgtgatgaggca
gagctgagtgtggtggactgcgtgctcgctcgagtgggtgcaggggacagccagatcaaa
ggagtgtccacctttatggctgagatgctggagacggctgctattcttcgatcagccaca
gaggattctctcatcattattgatgaattgggccgaggcacatccacatacgatggcttt
ggtctggcctgggcaatctcagagtacatcgccacccgcctcaagtccttctgcctgttt
gccactcacttccatgagctgacggcacttgcacagcaggtttccactgtccggaacctc
cacgtcactgccctgaccacagacagcactctcaccatgctctacaaggtgaaaaagggc
gtttgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaagcatgtg
attgctaatgcaaaggagaaagctttggagcttgaggagttccaggatatctctagagct
ggggaggaagctggacccgaagccaagaaacgctgcttggagaaacaggagggggagaag
atcatcgaggctttcctggctaaggttaaatcaatgcctgttgatggcatgtctgatgag
gctgtcaaagaggagctgcgcaaactcaaagcagaggtcatcagacaaaacaataacttt
gtcaatgagatagtatcacattctgccaaagttaaactgacctcagcctga
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