Garra rufa (doctor fish): 141297680
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Entry
141297680 CDS
T11039
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
grf Garra rufa (doctor fish)
Pathway
grf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141297680 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141297680 (smarcd2)
03036 Chromosome and associated proteins [BR:
grf03036
]
141297680 (smarcd2)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141297680 (smarcd2)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
141297680 (smarcd2)
PBAF complex
141297680 (smarcd2)
GBAF(ncBAF) complex
141297680 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
141297680
NCBI-ProteinID:
XP_073684220
LinkDB
All DBs
Position
22:complement(10678911..10691424)
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AA seq
507 aa
AA seq
DB search
MASRSGLSGFHVNPSTPINPGMNPMNPGHSSAMRMTAMPQNSPYRGMGSTPNQYLQRPSM
SPSRGMPMGGMGSMGSPLPGPSYSSAMAMRPGMPQAAMDPARKRLLQQHQQQPGGLMGPR
RGVKRRKMADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKR
KLRIYISNTYTPAKPEGEEAEKVSSWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKEL
YGPDNHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVH
TQTRASIMQALWLYIKNNKLQDCHEKEYINCNRYFRQIFSCPRMRFSDIPMKLASLLQHP
DPIVINHMISVDPNDQKKTACFDIDVEVDDPLKAQMTSFLSSTTNQQEITALEMKIHETI
ESINQLKTQRDFMLSFSNNPQDFIQDWLKSQSRDLKLMTDTVGNPEEERRTEFYHSPWVK
EAVGRYVFSKVQQRRQELEQVLGIRLT
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaggtcgggtttatcaggtttccacgtcaaccccagcaccccaataaacccc
ggtatgaaccccatgaacccgggtcacagcagcgcaatgagaatgacagcaatgccgcag
aattcaccctacagagggatgggtagtaccccgaaccagtacctccaacgtccaagtatg
tcacccagccgaggaatgccaatggggggcatggggtctatgggttcccctctgcctggt
ccgtcctatagcagtgccatggcaatgcgacccgggatgcctcaagctgcaatggaccct
gcccgaaagagactccttcaacagcatcagcagcagcctgggggtcttatgggtccaaga
aggggggtgaagaggcgtaagatggctgacaaagtcctccctcaaaggatcagggatctg
gtcccagagtctcaggcttatatggaccttctggcttttgagagaaagctggaccagacc
attgctcgcaaacgaatggagatacaagaggctatcaaaaagcccatcacgcaaaaacgc
aaattgaggatctacatttctaacacctacacgcctgccaagccagaaggggaggaggct
gaaaaagtgtcatcctgggaacttcgagtggaaggcaaacttctggaggatccagggaaa
cagaaacgaaagttttcatccttttttaaaagcctggtcattgaactggacaaagaactt
tatggcccagacaaccacttggtagagtggcacagaatgcctacaactcaggagacagat
ggatttcaggtgaagagaccaggggatgtgaatgtgaaatgtactctccttctcatgcta
gaccaccagcctccgcagtataagcttgatccacgtctggctcggctgttgggggtgcac
actcagaccagagccagtatcatgcaggccctgtggctctacatcaaaaacaacaagctc
caagactgccatgagaaagagtacattaactgcaaccggtacttcagacagatttttagc
tgccccaggatgagattttcagatattcccatgaagcttgccagcctccttcagcacccc
gaccccattgtcatcaatcatatgatcagtgtggatcccaatgatcagaagaagactgca
tgctttgatatcgatgttgaggtggacgaccctctgaaggctcagatgaccagcttcctg
tcatccaccactaatcagcaggagatcactgccctggagatgaagatccatgagactatt
gaatccatcaaccagttgaagacccagagagacttcatgctcagcttcagtaacaacccg
caggacttcatccaggactggctcaagtctcagagcagagacctcaaattaatgacagac
actgtgggaaatccagaggaggagagaagaaccgagttttaccactcaccctgggtcaaa
gaagctgttggacgctatgtattctcaaaggtccagcagaggagacaggaattggagcag
gtactgggaatccgactcacttaa
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