Garra rufa (doctor fish): 141297716
Help
Entry
141297716 CDS
T11039
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141297716 (rnf40)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141297716 (rnf40)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
141297716 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
zf-C3HC4
CC_Bre1
zf-C3HC4_3
BRE1
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-rbx1
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
141297716
NCBI-ProteinID:
XP_073684265
LinkDB
All DBs
Position
22:26453745..26469848
Genome browser
AA seq
1005 aa
AA seq
DB search
MSGAGGGKRPSGGDSPPGPPEKKLKKEEKTTTTLIEPIRIGGVSSTEEMDMKVIQFKNKK
LCERLEQRQALEDELREKIEKLEKRQATDDTTLLIVNRCWTQLEGNIHELLQRVEPKDAP
APVQTPATPPVPDAPVPAATPSSVPEPSAPLPAPIEGEDGLPQPPPSAGAVEEEQQQPVH
EKEQTQEQEQKQQLPDSEEKPADVPVEDGIPAPPPSLSESAKAFLATLDNSSEEELTLQL
QDRMQFSKGAVACMVCIFDRLHTSIDELCTRVQSAVCEDDSQRDIIATNRTLLEEHNRLQ
DLAYSLQGKHHKMSLEYNELVDKVTSSETKVSEMETAVEDLQWDIEKLRKREQKLNKHLA
EALEQLNTGYHATGSSGGLPGGQITLSIQKFESLNAELEQNQELANSRMAELEKLQQELQ
EAVRENEKLKVDLRNIPEEVLKETPEYKCLQSQFSLLYNESLSVKTQLDEARALLLTAKN
AHLRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINR
EMRHLISSLQNHNHQLKGDVQRYKRKLRETQMEINKLKCQSGDAGALMLDESVGDGGLEV
KKEEDEDQEEEEERRRELERQRAREREREAERERERERERERQRSEELKRKDSDTLKMLR
GELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAEKKSKAEVEELRQRVRELEERERK
ESKKLADEDALRKIRVAEETIEHLQKKLAATKQEEEALLSEMDVTGQAFEDMQEQNSRLM
QQLREKDDANFKLMSERIKSNQIYKLLREEKEELADQVLTFKTQVDAQLLVVQKLEEKEG
VLQSTLAALEKELALRTQALELNKRKAVEAAQLAEDLKVQLEHTQTKLREIQASVLDNRT
ARERESVNLKKAQEELSRLRRKLEKQKKVEVYTDADEILQEEINQYKAKLRCPCCNTRDK
ETVLTKCFHVFCYECLKTRYDTRQRKCPKCNAAFGANDFHRIYIT
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcgcagggggtgggaagcgcccctcaggaggggacagtccccctggccctcct
gaaaaaaagttgaagaaagaggagaagactacaaccactctcatcgagcccatccgcatt
ggaggagtttcttctacggaggagatggatatgaaggtcattcagttcaagaacaagaag
ctctgcgaacggcttgaacagaggcaggctttggaggatgagttgagggagaagattgag
aagctggagaagaggcaggcaactgatgacaccaccctgcttatcgtcaaccgctgctgg
actcagcttgaaggaaatatccatgaactgctgcaacgtgtggagcctaaagatgccccg
gcacctgtccagacccctgctacccctcctgttccagacgcccctgttcctgctgcaacc
ccttcatctgttcctgaaccttctgctcctttaccagctccaattgaaggtgaggatggc
ctcccccagcctccaccttcagctggggcggtggaagaagaacagcaacaaccagtgcac
gaaaaggaacagacgcaggaacaagagcagaaacagcagcttcctgactctgaggagaag
ccggctgatgtaccagtggaggatggaattcctgcccctccaccatctctcagcgagagt
gcaaaggctttcctggccactctggataacagcagtgaggaagagctcacactgcagcta
caagataggatgcagttcagcaagggcgccgtggcctgcatggtctgcatatttgaccgt
ctgcatacctccattgatgagctgtgtactcgagtgcagtcagctgtttgtgaggatgac
agtcagcgagacataattgccacaaaccgcacacttctagaggaacataatcgactgcaa
gatcttgcttactcccttcaaggaaaacaccacaaaatgtcattggagtataatgaactg
gttgacaaagttacaagttctgagactaaagtgtctgagatggaaaccgctgtggaagat
ctgcagtgggacattgaaaaacttcgcaagagagagcagaagctgaataaacacctagca
gaagctctggagcagcttaataccggttaccatgctactggcagttcaggtggattacca
ggtggtcaaatcacactcagtatacagaagtttgagtctttgaatgccgaactggagcag
aaccaggaacttgccaacagtcgcatggcagagcttgagaaactgcagcaagagctacag
gaagctgttcgggagaacgagaaactaaaggtggatctgaggaatataccagaggaagtg
ttaaaggagacgccagaatacaagtgcctccaatcacagttctctctgctgtacaatgag
tctctaagtgtgaagacccagctggatgaagccagagctctactgcttacagccaaaaac
gctcacctgcgacagatagagcacatggagagtgatgagttgtctcttcaaaagaagtta
cgcactgaggtcatccagctagaggacacgctggcccaggtccgcaaggagtacgaaatg
ctacggatcgagtttgaacagaatcttgcagccaatgaacaagcaggccctataaacaga
gaaatgaggcacttaatcagcagtcttcaaaatcataatcatcagctgaaaggtgatgtg
cagagatataagaggaaactacgtgagacacagatggaaataaacaagttgaagtgccag
agtggagatgcaggtgcactgatgttggatgaaagcgtgggtgatggaggactggaggtt
aagaaagaggaagatgaggaccaggaggaggaggaagagaggagaagagaactggaaagg
caacgggcacgggagagagagagggaggcggagcgagagagggagcgagaaagagagcgc
gagcgacagcgcagtgaggagctgaagaggaaagactctgacacactgaagatgcttaga
ggagagctcaaaaaagctcaggagtctcagaaggaaatgaaactactgctagacatgtac
aaatcagctccaaaggagcagagagataaagtgcagcttatggctgcagaaaagaagtcc
aaagcagaagtggaagagttaaggcagcgagtgcgggaactggaggagagggaaagaaag
gaaagcaaaaagctggcagacgaagacgctctccgcaagatccgtgtggctgaggagacc
atcgaacacttgcagaaaaaactggctgctactaaacaggaggaagaggctctgctgagt
gaaatggatgtgacaggacaggcgtttgaagacatgcaggagcagaatagcagactcatg
cagcagctccgagagaaagacgatgccaacttcaaactaatgagtgagagaataaaatcc
aaccagatttacaagcttctgcgggaggagaaagaagagttggcagaccaagtgcttact
ttcaaaacccaggtggacgctcagctgctagtagtccagaaactagaagagaaggagggt
gtcctacagagcacactggccgctctggagaaggagctggcactgcgcactcaagccctg
gagctgaacaagcgcaaggcagtggaggcggcccagttggccgaggacctcaaagtgcag
ctggaacacactcagaccaagttgagggaaatccaagcctcagtactagacaaccgcact
gcccgtgagagggagagcgtcaacctcaaaaaagcacaggaggaattgtccagactgcgg
cgtaagctggagaaacagaagaaggtcgaggtgtacacagatgctgatgagatcctgcaa
gaagaaattaatcagtataaggctaaattacgctgtccctgttgtaatacccgagacaag
gagaccgtcctcaccaagtgtttccacgtcttctgctatgaatgcttgaagacccgctac
gacactcgccagaggaagtgccccaaatgcaatgctgcattcggcgcaaacgacttccac
cgcatctacatcacctaa
DBGET
integrated database retrieval system
