Garra rufa (doctor fish): 141298035
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Entry
141298035 CDS
T11039
Symbol
drosha
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141298035 (drosha)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141298035 (drosha)
03009 Ribosome biogenesis [BR:
grf03009
]
141298035 (drosha)
03036 Chromosome and associated proteins [BR:
grf03036
]
141298035 (drosha)
Enzymes [BR:
grf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
141298035 (drosha)
Messenger RNA biogenesis [BR:
grf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
141298035 (drosha)
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
90S particles
RNase
141298035 (drosha)
Prokaryotic type
rRNA processing factors
141298035 (drosha)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
141298035 (drosha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
141298035
NCBI-ProteinID:
XP_073684641
LinkDB
All DBs
Position
22:13442304..13469920
Genome browser
AA seq
1288 aa
AA seq
DB search
MSFHAGRGCPRGRPPAPGPMYRPAPPRYHYDPPAAPGPIYNPQGGSGYMPPHPDFMPFHF
PPPPQGSNPLPQCPVRPPVFSEPPPFPPPAPHNSDSSAPVPVQSSYPYMMPTVTPPPLPP
VPPSMPPSMPYPPSYPMSYPPQPQLPPPPSFNPSYVQPGGSFKPERPRPPPQYKSDSCSR
SPERLRHHDDHRHRGHSYGGYGGRHNREFGGEKRDRGCSSERRRSDSPRCKSDYDRGRVP
SRHRSRERYRHRDEPGSPPSDRHRKHTRNRSGSRERKRRRVEEEKERRTDSASSSRERST
SYSRSRDVEETSTDRHEEEKGEEELLKPAWIRCTHAENYYSNDPMDQVGDSTVVGTSKLR
GLYERFEEELGRRQERAKSSRPKWEPPKTKLDEDQDESSSESECDSDGGGSSCSSSSDSD
VFDVIAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEQPVKT
CRPMSNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSCFSHTPLTNIPLCRV
IRFNIDYTIHFIEEMAPENYCVKGLELFSSYLFKDILELYDWNIAGPDDSGQSGCQRFHF
MPRFVRFLPDGGKEVLSMHQVLLYLLRSSTALVPEEEIANMLQWEELEWQKYAEECKGMI
VTNPGMKPSSVRIDQLDREQFNSSVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLR
HLLANSPKVKQIDKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAM
MLPVLTHHIRYHQCLMHLDKLIGYMFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCG
IRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTS
VHLYYLFPCLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMA
NCFEALIGAVYLEGGLEEAKQLFGRLLFNSEELRDVWLNYPPHPLQVQESLTDRQLIESS
PVLQKLTSFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEY
LFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRTKTLADLL
ESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDI
PLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQK
RFIERKYRQELKEMRRERERQERDSDEG
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccacgctggccgtggatgcccgaggggaagaccacctgctcctggcccaatg
taccggcccgctcctcctcggtatcactacgaccctccagccgctccaggtcccatctat
aaccctcaaggcggcagtggctacatgccacctcatcctgacttcatgccattccatttc
cctccaccaccacagggctctaaccctctgcctcaatgccccgtacgcccaccggtcttc
tcagagccacccccttttcctccacctgctcctcacaactcagacagctctgctccagtt
ccggttcagagctcttacccctacatgatgcccactgtcacccctccaccccttccacct
gtgccaccctcaatgccaccttccatgccctacccgccatcatatcccatgagctatcct
ccacagccacagctccctcctccaccaagcttcaacccatcttatgtccagcccggaggt
tccttcaaacctgaacgcccccgcccgcctccacagtacaagtcagactcctgttctcgc
tcacctgagagacttcgtcatcatgatgaccaccgacataggggccacagctacggagga
tacggaggccgccataatcgagagtttggaggagagaaacgggacagagggtgcagttca
gagcgcaggcggtcagacagcccacggtgtaaatcagactatgacagagggcgagtgcca
tcgagacaccgcagcagagagcgctatcgacatagagatgagccaggttcgcccccctca
gacagacacaggaaacacactcgtaaccgttcaggcagtcgagagagaaagcgacgacgt
gtggaggaggagaaagagaggagaacagacagtgcctcaagcagtcgagagagatctaca
agttacagcaggagtagagatgtagaggagacatccactgaccgtcacgaggaggagaaa
ggagaggaggagttactcaaacctgcctggatccgctgtacacatgctgaaaactattac
tcaaatgatcccatggaccaagtgggtgactctacagtcgtgggcactagtaagttgaga
ggtctgtatgagcgctttgaggaagagcttggtcggagacaggagcgggccaaatccagc
aggcctaaatgggaaccacccaagaccaaactggacgaggatcaggatgagagctccagc
gagtcagaatgtgattccgatggaggcggtagcagctgctccagcagttctgactctgat
gtgtttgatgttattgctgagatcaagaggaagaaagctcatcctgaccgcctccatgag
gagctgtggtacaatgaccctggacagatgaatgacgggccattatgcaagtgcagtgcc
aaagccaggcgaactggaatccgacacagtatttatccgggtgaacagccagtgaaaaca
tgtcgaccaatgagtaacaatgccggaaaactgttccactacagaataactgtgtcccca
cccaccaactttctaactgatagacccacggttattgagtatgatgaccacgagtacctg
tttgagggcttctcctgcttctctcacacacctcttactaatatccctttgtgtcgggtt
attcgcttcaacatcgattacaccatccactttatagaagagatggcacctgagaactac
tgtgttaaaggcctggaactgttttcctcgtacctttttaaagacatcttggagttgtac
gattggaatatagcaggtcctgacgacagcggccagtcaggttgtcagaggtttcatttt
atgccacggttcgtccggtttctcccagatggaggaaaggaggtgctgtccatgcaccag
gtgctgctgtatcttctgcgcagcagcacagctctagttcccgaagaggagattgcaaac
atgctacagtgggaggagctggagtggcagaaatacgccgaggagtgcaagggcatgatc
gtcaccaaccctggcatgaaacccagctctgtaaggattgaccagttagatcgtgagcag
ttcaactccagtgtgatcactttccccatcattgtgcattttggtatccgacctgcccag
cttagctacgctggagacccgcagtatcaaaagttgtggaagagttacgtaaaattgcgg
cacttgctggctaacagcccgaaggttaaacaaattgacaaacagaagttaacgcaaaga
gaggaagctctacagaagatcaggcagaaaaatacaatgagaagggaggtcacagtggag
ctcagcagtcagggtttctggaagactggtattcgttctgatgtttgccagcacgccatg
atgctgccagttcttacccaccacatccgctaccaccagtgcctgatgcatttagacaag
ctgatcggttacatgtttaaggaacgatgcctgctgcagttggcaatgactcaccccagt
catcatcttaattttgggatgaatcctgaccatgctcgcaactctctgtcgaactgtggc
ataaggcagcccaaatatggagaccggaaagtgcatcatatgtacatgaggaaaaaggga
attaacaccttgattaatattatgtcaagactgggccaggatgacccgtcaccctccaga
atcaatcataatgaacgcttagagttccttggtgatgcagttgttgaattcctaaccagt
gtgcatctctactacctattcccatgcctggaagagggaggacttgccacatatcgcacg
gcaatcgttcagaatcagcatcttgctatgcttgctaagaaattggagttggatcggttc
atgttatatgctcacggccctgacctgtgcagagagtcagacctccgacatgccatggca
aactgttttgaggccctgataggggccgtttacctagaaggtggtttagaggaagccaag
caactctttgggagactgctgttcaacagtgaggagctaagggatgtttggctgaactat
ccacctcatcctttacaggtgcaggagtcactgacggacaggcagttgatcgagtcgtct
ccagtcctgcagaaactcactagttttgaggatgccattggagtgctgttcactcatgta
cgtctcctcgcacgagccttcactctgcgaacagtgggcttcaaccacctcaccctaggc
cacaaccagaggatggagtttctgggagattctatcatgcagctggtggcgactgaatat
ctgttcatccatttcccagaccatcatgaaggacatttgacactcctgcgcagctccttg
gtgaataaccggacacaagcgaaggttgcagaggaattgggcatgcaggaatatgccatc
accaacgacaagaccaaacgtcctgttgccttgcggactaagactttagccgatctactg
gagtcattcattgcagctctttacatagataaagacctagagtttgtgcacacatttatg
aatgtttgcttcttcccacggctcaaggagtttatcttgaaccaggactggaatgatcca
aaatcacagctgcagcaatgttgtctaaccctgcggacggagggcaaagagccagacatt
cctctatacaaaacacttcagacagttggaccctctcatgccaggacctacacagtggcg
gtgtattttaagggtgaacggattggctgcggaaaaggaccaagtattcagcaagctgag
atgggtgcagccatggatgcgctggagaaatataactttcctcagatggctcatcagaaa
cgcttcattgaaaggaagtaccgacaagaactgaaggagatgagaagagagcgagagcga
caggagagagatagtgatgaagggtag
DBGET
integrated database retrieval system
