Garra rufa (doctor fish): 141298049
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Entry
141298049 CDS
T11039
Symbol
jmjd1cb
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141298049 (jmjd1cb)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
141298049 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
zf-C5HC2
C1_2
Motif
Other DBs
NCBI-GeneID:
141298049
NCBI-ProteinID:
XP_073684657
LinkDB
All DBs
Position
22:complement(9888151..10065846)
Genome browser
AA seq
2533 aa
AA seq
DB search
MVVGKRFLCVSGEEPLEPAHIASWSWRAGVIRAVTHRDHDNPELTVYVEFDDLEWDKREW
VKVYEDFQIFLLEHQLVWAKRKEGAQLQGTKAKQIQWPALTFKPLVGKSVFGSITAIEFF
SDRHLDFLTDEGACQPYQDEVDSLSPVFRDYPHLHEEVKAWVKDQKVQEIFMQGPYSLNG
YRVRVYRQDSATQWFTGIITHHDLFSRTMVVMNDQVLEPQNVDPSMVQMTFLDDVVHSLL
KGENIGITSRRRSRSSQNSNTAHTTGGRPSGSTGISQGHYTRAQANSPRPVMNSSGSTPK
QASQAQQQQQQQSQHAQQQVSQQHQQQQSSPGQQRGSRSSRRKGSDSSVPDDEKIKDEKS
ESGGKDASKNKSKQTNKRRKADEEDKKSGLKRLKTETSDLSESSDSENSNKRSIDSSSEH
SSENELKCKSTSKVPDEEEKSQGSKPVDELTVINRLSPWDEVQDKSSKPVAVEVAQVAES
ERSVESRSPLPPPASCTPNQASAPTEVQSCIVEMKSTVKTLPKDHYGIGTPRTHTPKCVI
DITEDANTRPSSGENSEAVSALLASQNCDAYVPESRHLVLNASHSESRRPDGGGGKIEFA
HSEVIRPVTSVSESAALGERGKLQQQYTSMVIKNASLTEEIRKTHKLSPSPDLPKPKSNS
SPDILKPKCNPSPDIIKSKTHSVHESSKPKPNTSPEVSKHKPRHPENPTTTGRLPLKPEP
DVPRSSFKPVPARGGPSDSTKSPLVVDKNEHFTVYRDPALVRPESDSNHVAYLHPHLHPL
HGSSHATCLTPSSHHPSHLLPSSSMSHSVHHPHLLSTVMPTIPPASLLGSHSRLDSPGLT
HLALAHHHSHQQQQFLQHQPPPSLLAQTHGGASYNQLGLYPIIWQYPNGTHSYPSGYKWV
HPENAVNSDSSLRRNTSSPWLHQSTPVTSADSMGILSHVPGRPASADPHRPIKISSHSSP
PLSKTPGELHKEDQEKNVFVDTMRSVANAHLKQEPDRSRTPTNKELHRLYMESPHSKQQL
PPRMPQEGPDRSSKYKEENRRILLESIEMAAKIRAGETERESYPRISSQPKSHEKEAEHS
VADLYKYKHAVSQSLPQTNYFTTLSNSVVNEPPRLFQSKDLNPYFDKAPAAPSPLCLGSY
NSSHTKSLSKPPPLIKHQPEGEGLVGKITEQLSQQAPMHSLSTSVVTVSERCSPAISPSS
QPKGMPALRRAPVFHPPTQQALDRKEGAYGRLSPPTLTPIQPVSSAGKVSEQQKPPTLLP
ELRDEKSGAELGSAESCRSGGEAKSHEKVAWHSENSQGKPQAAMASVIVRPSTCIKYDGS
PGPKTAPKEQLGSRLFAGRTQADCLKVAESRESGRVILPNTNLEDPSDQYNKNLIRASPG
VIPSSVAVVANSVCNTRTNEAIVAASGTFSTQSHNGADLSFSISGTSGSSRLESSASKSR
PPTVVDSQEGGSRTTSPSALPQAGSAGPTQAYSRNFVHLKKAKAALAAAQSRGSSSASES
ESGSVRSSQDSPTIVQDNSTPCNPASKASLVPNGQPAQVCQSNYHKLKKAWLTRHSEEDK
NTNKSEKGANAISELIKPCSVNLIAPASSDVDLGKDSKGQEDKLSQEDRKTRRTPKRPYE
SGSESGDDSDSSESKLEQRTKRQPKPTYKKKQNDMQKRKGDNEKEEEEVKPNGIFRSAKE
KTKLKLASTNGIPRSVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQKCRECRSVRTKKG
EESTHSPVFCRFYHFRRLSYSKNGVIRIDGFSSPDQYDEEALSLWAPEGYEENNLDMETS
KYILSYIGDKFCQLVMTENTATTWIKKDAKIAWKRAVRGVRESCDACEATLFNIHWVCQK
CGFVVCLDCYKAKERKSSKDKELYAWLKCVKGQPHDHKHLMPTQIIPGNVLTDLVNAMHM
LREKYSIKSHCSCAWKQNTLYNKLPSTNGVSQVLQNVLNHSNKISLCKPEGGQQNSSLKV
EANGGSSPASDTSTDSKFTPPESQSPLHFLADLAEQKSREEKKENKESSVGKIKEEKDQS
DALDSLHSKATSLEQGSTLRDLLTTTAGKLRLGSTDAGIAFAPVYSTASQIVKSGRSMPN
ILDDIIASVVENKIPAGRGTKLNLKLEPLEEPKAEKKKAVEEPPKLYADIPHSWLYERRL
LWLKDHRNSNNWKLFRECWRQGQPVLVSGVHKKLNVSLWKAESFNQEFADHQGDLLNCKD
GVMSNSGVKEFWDGFEDLTKRPKSKDGETMVYRLKDWPSGEEFMALMPSRYDDLMKNLPM
PEYSDPEGNLNLASHLPSFFVRPDLGPRLCCAYGVAASQEQDFGTANLHMEVSDIISVLV
YVGVAKGNGVLSKTGVLKRLEEEDLDDNVKKRLKDSSETPGALWHIYTSKDGEKIKEFLH
KVAKEQGVEIPADHDPIREPSWYLSRKLRQRLLDEYAIQGWTVVQFLGDSVLIPAGALHQ
VQNLHSCVQVINDFVSPEHVVHSFHLTQELRSSKEEINYEDKLQVKNIFYHCVKDAVGTL
KRCCAEEEEETNS
NT seq
7602 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcgggaagcggttcctgtgcgtgagcggagaggagccgctggagcccgcgcac
atcgcgagctggtcatggcgagccggagtcatccgagccgtcactcaccgcgaccacgac
aatcccgaactgacggtgtacgttgagtttgacgacctggagtgggataagcgtgagtgg
gtcaaggtgtacgaagacttccagatctttctgctggaacatcagctggtttgggccaaa
aggaaggagggtgcccagctgcagggaacaaaagccaagcagatccagtggccagctctg
acgttcaagccgctagtagggaagtcagtgtttgggtccatcacagccatcgagttcttc
tctgacagacacctggacttcttgacggatgaaggagcctgtcagccctatcaggatgag
gtggacagtttaagtcctgtttttagggactatccacatctccatgaagaagtgaaagcg
tgggtgaaagaccaaaaagttcaggaaatttttatgcaaggtccctattcattgaatggc
taccgtgtacgagtttacagacaggactcagccacccagtggttcacgggcatcatcacc
caccacgatctcttcagccgcactatggttgtcatgaatgaccaggtactagagcctcag
aacgttgacccctccatggtacagatgacctttctggatgatgtggtccattctttatta
aaaggagaaaacatcggtatcacgtcacgacgcaggtctcgctctagccagaacagcaac
actgcccataccacaggagggagaccaagcggctctacagggatctctcagggtcattac
acacgtgcccaggccaatagccccagacccgtgatgaattcatctggctccacccctaaa
caggcctctcaggctcagcagcagcagcagcaacaatcccagcatgctcagcagcaggta
tctcagcaacaccagcagcagcagtcctcaccaggtcaacagcgcggctcgcgatcttca
cgtcggaaaggctctgacagcagcgttccagatgatgagaagatcaaagatgaaaaatca
gaaagtggaggaaaagatgcttctaaaaacaaaagcaagcagacaaacaagaggaggaaa
gcagatgaagaggacaagaagagcggtctcaagcggctgaaaacagagacgtctgacctc
tctgagagcagcgactctgagaactctaataagcggagcatagactcctcatcggagcac
agttcagagaatgagctcaaatgcaagagcacttctaaagttccagatgaggaggagaag
tcccagggatccaagcctgtggatgagttgaccgtaataaacaggctatctccctgggat
gaggtgcaggataaaagcagcaagccggtggccgtggaggtggctcaggtggcagagagc
gagcggtcggtagaaagtagatctccgcttcctcctccggcctcctgtacgccaaaccaa
gcctctgcaccgacagaggtccaaagctgcattgtcgagatgaaaagcactgtgaaaacc
cttcccaaggaccattatggcataggaacacctcggacgcacacgcccaagtgcgtaatt
gatatcacggaggatgcaaacacgcggccgagttccggagagaactctgaagccgtatcg
gccctgctggcatcacagaattgcgatgcttacgtacccgaatccagacatttggtgcta
aacgcctcccactcggagtccaggaggccggatggcggaggcgggaaaatcgaattcgcc
cactctgaggtcataaggccggtgacatcagtgagtgagtcagcagccctgggcgagaga
ggaaagctccagcagcagtacacatctatggttattaaaaatgcctcgctaaccgaggag
atcaggaaaacccataaactcagtccttcccctgacttgcccaaacctaagtccaactca
tcccctgacattctcaagcccaagtgcaatccttcacctgacatcataaagtcaaaaacc
cacagcgttcatgaatcctccaagcctaaaccaaatacatctcctgaggtgtctaaacat
aaaccgcgccaccctgaaaacccaactacgacaggccgcttgccactcaaacctgagcca
gatgtaccccgctccagttttaagcctgtgccagcccgaggggggccatccgattcaact
aaaagcccgcttgttgtcgacaaaaacgagcattttacggtgtacagggaccctgcgttg
gtgcgtcctgaatcagatagcaaccacgtggcttatctgcatccacaccttcatccacta
catggttcttctcacgctacgtgtctcacgcccagctcgcatcacccgtcccacctcctt
ccttcttcctccatgagccactctgtgcatcacccacaccttctgtccaccgtaatgccc
acaattccaccagcctctcttctgggcagccattcccggctggactctcctggtcttacg
cacttggctttggcccaccaccattcccaccagcagcagcagtttctccagcaccagcca
cccccatccctgctggcccagacgcatggaggtgcctcgtataaccagctcggcctctac
cccatcatctggcaatatccaaacggtacccactcctacccatctgggtacaagtgggta
catccggaaaatgctgtaaattcagactccagcttacggaggaacacttccagcccctgg
ctgcaccagtccacccctgtaacctcagcagacagcatgggaattttgagccatgtcccg
ggtagaccagccagcgcagatcctcatcgacccatcaagatcagctcacactccagcccg
ccgctctccaaaacccctggagaactccacaaggaagatcaggagaagaatgtgtttgtg
gacactatgcgaagcgtggccaatgcccacctgaagcaagagccggaccgcagtcggaca
cctaccaacaaggagctgcaccgtctctacatggagtccccccacagcaagcagcaactg
ccaccacgcatgcctcaggaggggccggaccgtagcagcaagtataaggaagaaaaccgc
cgcatccttctagaaagcattgaaatggctgctaagatccgtgccggagagaccgagcgt
gagtcttaccctcggatttcatcccagcccaaaagccacgaaaaagaggcggagcactct
gtggctgatctgtacaagtacaaacatgctgtatctcagtccctccctcaaaccaactac
ttcaccactctgtcaaatagtgttgtaaacgagccaccacgactttttcaatccaaagat
cttaatccgtactttgacaaggcacccgcagcccctagccccttgtgcttgggttcgtac
aactctagtcacaccaagtctttgtccaagcctccccctctcattaagcaccagccggag
ggagagggactggtgggcaagatcaccgaacagctcagtcaacaagcacccatgcactca
ctcagtacctcagtggtgacggtcagtgaacgctgcagtccggctatctctccctccagt
cagcccaaaggcatgccagccttgcgtagagcgccggtatttcacccgcccacccagcag
gcgcttgaccgcaaggaaggtgcctatggtcgcctttctccacctacgctcacccccatc
cagcccgtcagctcagcggggaaggtgtcagaacagcagaagccgcccaccctgctccca
gagctcagggacgagaaaagcggagccgagctgggctcggccgaatcctgccggtctggc
ggggaagcaaagagccacgagaaagtggcctggcattcagagaatagccaagggaagcca
caggcagccatggcatctgttattgtccgcccttctacttgcataaaatatgacggctcg
ccaggtcccaagacggcacccaaagagcaactcggtagcagattgtttgctggccgcact
caggcagactgcctgaaagtggcagagagtagggaatctgggagagtcatcctaccaaac
acgaatttggaggatcccagtgatcagtacaacaaaaacttgattagagcgtcaccgggt
gtcattcccagctcagtggcagttgtggccaattctgtgtgcaacactaggactaatgaa
gccattgtcgctgccagcggcacgtttagcacgcagagccacaatggagcagatctgtca
ttctccatctctggcactagtggtagtagcagactggaaagctctgcttccaaaagccgc
cctcccactgttgtcgactcgcaggagggaggttcaagaaccacctcacctagcgcgctg
cctcaggctggctccgctggccccacacaggcctactcaaggaactttgttcacctgaag
aaggccaaagcagctctggccgcagctcagtctcgtggctccagtagcgcctcagagagt
gaaagcggtagcgtcagatcctctcaggactcgcccaccatcgtccaggataattctacg
ccctgcaatcctgccagcaaagccagcctggtgcccaatggacagccagcgcaggtgtgc
cagtctaactatcacaagctcaagaaagcctggctcacgcgacactcagaggaggacaaa
aacacaaacaaatctgaaaaaggcgcaaatgccatttctgagctaattaaaccatgctcc
gtcaacctgatcgcccccgcatctagtgatgtggatctgggcaaggacagcaaaggacaa
gaggacaagctgtcccaggaggacagaaagactcgtcgtaccccaaagcgcccatacgaa
tctggctcggagagcggtgatgactcagactctagtgagagcaagctggaacaaaggact
aaaagacaacccaagcccacttacaaaaagaagcagaacgacatgcagaaaaggaaggga
gacaatgagaaggaggaggaagaggtgaagccaaatggtattttccggagtgccaaggaa
aaaaccaaactcaagctggccagtaccaatggcattccccggtcagtactgaaggactgg
aggaaggtaaagaagctaaagcagacgggtgagtccttcctgcaggacgactcgtgttct
gaaattgggcccaatttgcagaagtgcagggagtgccgctccgtacgcaccaagaaagga
gaggagtctacccattcacccgtcttctgccgcttctaccactttcgccgcctctcatac
agtaagaatggagtgattcggattgatggcttctcctctcctgatcaatatgatgaagag
gcgcttagtctctgggccccagagggttatgaagaaaacaacctggacatggagacctcc
aaatacattcttagctacattggagacaaattctgtcaattggttatgactgaaaataca
gcaactacatggataaagaaagatgccaaaatcgcctggaagagagcagtgcgcggagtg
agagagagctgcgacgcatgtgaagccacattgtttaacattcactgggtctgccaaaaa
tgtggatttgtggtgtgtttggactgttacaaggccaaggagaggaagagctccaaagac
aaagagctgtatgcctggttgaagtgtgtcaagggacagcctcatgatcacaagcacctg
atgccaacacagatcattccaggaaatgttcttacagacttggtgaacgctatgcacatg
ctcagggagaagtacagcattaaatcacactgctcatgtgcttggaaacagaacactctg
tacaacaagctgccgtccaccaatggcgtctcccaggtgttacaaaacgtgcttaatcac
agcaacaagatctctctgtgtaagcccgagggcggccagcagaactcctctctgaaggta
gaggctaacggagggagcagtcccgccagcgacaccagcaccgacagcaagttcacccca
cccgagtcccaatcgcctctgcacttcctggccgatctggccgagcagaaatcccgtgag
gaaaagaaggaaaataaggagtccagtgtagggaagataaaggaggagaaagatcagtca
gatgctttggattctctgcacagtaaagcaacatctctggagcagggatcaaccctacga
gacctcctcaccaccaccgcaggcaagctgcgcctgggctctactgatgcaggcatcgca
ttcgctcctgtgtactccactgcctcgcagattgtcaagagtggccgcagcatgcccaac
atcctggatgacatcatcgcctctgtggtggaaaacaagatcccggcgggccgtggcacc
aagctcaacctgaagctcgagcctctggaggagcccaaagctgagaagaagaaagcagtg
gaagaaccgcccaaactctatgctgacatcccgcattcctggctctacgagcgcaggctg
ctctggcttaaagaccaccgcaacagcaacaactggaaactcttcagggaatgctggaga
caaggacagccggtgctggtctctggagtgcacaagaagctcaacgtcagtttgtggaag
gccgaatccttcaaccaggagtttgctgaccaccagggggacctcttgaactgcaaggat
ggagtaatgtccaactcaggcgtcaaagaattctgggatggctttgaagatctcacgaag
cggccaaagtctaaagatggagaaaccatggtgtatcgactgaaggactggccttcaggg
gaagagtttatggctttgatgccctccaggtatgatgatctcatgaagaacctgccaatg
cctgagtattcagaccccgaggggaacctcaacctggcctcccatctgccctctttcttt
gtgcggccggacttgggcccacgcctctgctgcgcttacggtgtggcggcatctcaggag
caggattttggcacggctaacctgcatatggaggtgtcggacatcatcagcgtgctggtt
tacgtaggagtggctaaagggaacggtgtcctctccaaaacgggagtgctcaagaggctg
gaggaggaagatctggatgacaacgtgaagaaaagattaaaggactcgagcgagactccc
ggagccttgtggcacatctacacgagcaaagacggcgagaagattaaagagttcctgcac
aaggtggcgaaagagcagggcgtggagatcccagcagatcatgacccgatccgtgagcct
agctggtacttgagccgtaagctgcgtcagcgactgctggatgaatacgccattcagggc
tggactgtggtgcagtttctgggtgattcagtcctgatccctgctggagctctgcaccag
gtgcaaaacctgcacagctgcgtccaggtgatcaacgacttcgtctctccggagcatgtg
gtgcattcgttccacttaacccaggaactcagatcctccaaagaggaaatcaactatgaa
gataagctacaggtcaagaacatcttttaccactgcgtgaaggatgccgtgggaacatta
aagaggtgctgcgcagaggaagaggaggagacgaactcatga
DBGET
integrated database retrieval system
