Garra rufa (doctor fish): 141298742
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Entry
141298742 CDS
T11039
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03018
RNA degradation
Brite
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141298742 (mtrex)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
141298742 (mtrex)
Spliceosome [BR:
grf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141298742 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
141298742 (mtrex)
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
Pre-60S particles
Helicases
141298742 (mtrex)
Transfer RNA biogenesis [BR:
grf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
141298742 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
141298742
NCBI-ProteinID:
XP_073685150
LinkDB
All DBs
Position
23:35867747..35912499
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKATPKSAAEPGKTPDKAGKQQSDSPAVRKRDADNDGPD
EMVLGKRQKLETVSAEEINLSELMPRVKVEPVETVEGCTHEVVLPEDDVYTPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDTGGNVGGKWDPKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFNNA
TDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVDKMKK
LEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLAFLQPGRLVRVKKEDL
DFGWGIVVNFQKKANAKAGGANVDPMIVVEVLLHCSKESVKNAATEAAKPAGPGEKGEMQ
VVPVILHLITSISSVRLFIPKDLRSYDNRQSMLKSIQEVQKRFPDNIPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQATA
LLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLNVDEDTYLNQFRPHLM
DVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFATGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggagacgatttgttcagcgtgtttgatgaagaacaggccggttct
agcaaaaaagccaccccaaagtccgcagctgagccagggaaaactcctgataaagccggg
aaacagcagagcgattcaccagctgtgcgcaaaagagatgctgacaacgatggaccagat
gagatggtgcttgggaaaagacagaagctggaaaccgtgtcagctgaggagatcaatctg
tcagaactcatgcctagagtgaaggtggagccggtggagacagtggagggctgcactcat
gaggttgttcttcctgaagacgatgtgtacactccactgaaaccacgcgttggaaaagca
gcgaaggagtaccccttcatactcgaccctttccagcgcgaggccattttgtgcatcgat
aacaaccagtctgtgcttgtgtcagcccatacatcagcagggaagaccgtttgtgcggag
tatgccattgctctggctctccgagaaaagcagcgagtgatcttcaccagccccatcaaa
gctctgagcaatcagaagtacagagagatgtatgaagagttccaggatgtgggtctgatg
accggtgatgtcaccattaaccccacagcgtcctgcctggttatgaccactgagattttg
aggagcatgctgtacagagggtcagaagtcatgagggaggtggcgtgggtcatctttgat
gagatccattacatgagagactcagagcgtggcgtggtctgggaggaaaccatcatccta
ctgccagacaatgtgcatcatgtcttcctgtcagccaccattcccaacgctcgacagttc
gctgagtggatttgtcatcttcacaaacagccctgccacgtggtgtacacagactaccgc
cccactccactgcagcactatgtctttccagcagggggcgatggactccaccttgttgtg
gatgagaatggagagttcagggaagacaattttaacacagcaatgcaggtcctgagggac
gcgggggacacaggaggaaacgttggaggcaaatgggaccccaaaggcagaaagggtgga
accaaaggtccatccaatgtctttaagattgtgaagatgatcatggaaaggaacttccag
ccggtgatcatctttagcttcagtaagaaagaatgcgaggcctacgcactgcaggtggcc
aaactggatttcaacacagacgatgagaagaaactggtggaagaagtgttcaataatgct
actgactgcctgtctgatgaagacaaaaagctgccacaggttgagcatgttctgccgtta
ctgaagagaggaattggaattcatcatggcggtctcctcccgatcctgaaagagaccatt
gagatcctgttctctgaggggctgataaaggccttgtttgctacagagacatttgccatg
ggaatcaacatgcctgcgaggaccgtgctcttcaccagtgcacgcaaatttgacggcaaa
gacttccgctggattacctctggagagtacatccagatgtcaggacgtgccggccgaaga
ggaatggacgagagaggaatagtgattttcatggtcgatgagaagatgagccctgcggtg
ggcaaacagttactgaagggttcagcggatcctctgaacagtgcgttccacctgacctac
aacatggtgctcaatctactgcgtgtggaggagatcaacccggagtacatgctggagaaa
tccttctaccagttccagcactatagagccgtgcctggcgttgtagataagatgaaaaag
ctggaggaggagtacaatgcaatacgaatccccaatgaagagagcgtggtgacctactac
aagatccgtcagcagctggccaaactgggcaaagaaattgaggaatttattcacaaacct
agatactgcctagccttcctgcagccgggcagattggtcagggtgaagaaggaagatcta
gattttggttggggcatagtcgtcaatttccagaagaaagcaaatgccaaggctggaggt
gctaatgttgacccgatgattgtggtggaggttctgctccactgcagcaaagagagtgtg
aagaacgcagccacggaggcagccaaacccgcaggcccaggagaaaagggcgagatgcag
gttgttcctgtgattctacatctcatcacctccattagctctgtgcgcctcttcatcccc
aaagacctgcggtcatacgacaaccgacagagcatgctcaaatccatccaggaggtgcag
aaacgtttcccagataacattcctctgctagatcccatagacgacatgggaatcaaggat
ccagcgctgaagaaggtcattcagaaggtggaggcgttcgagcacaggatgtacacacac
cccctgcacagcgaccccaacctggaggccgtttacactctgtgtgagaagaaagcactg
attgcaggcgacattaaagcggcgaagcgcgagctaaagaaagcacgtaccgtgctgcag
atggacgagctgaagtgcagaaagcgtgtgctgcggcgcttgggattcgccacttcctct
gatgtcattgaggtgaaaggccgtgtggcctgtgaaatcagcagtgcagatgagctgttg
ctgacagagatggtgtttaatgggctgttcaacgacctgacggcggagcaggccaccgcg
cttctcagctgctttgtcttccaggaaaacgcgaatgagatgcccaaactgacagagcag
ctggctggaccgctgcgtcagatgcaggaatgtgccaagcgtattgctaaggtgtccgca
gaggccaagctgaatgtggatgaagacacgtacctgaaccaatttcgccctcacctgatg
gatgtggtctacacgtgggccaacggctcctcattctctcagatatgcaaaatgacagat
gtgtttgaaggaagcattatccgttgtatgcgcagattggaggagctcttgaggcagatg
tgccaggcggccaaggccattggaaacacagagctggagaataagtttgccacgggtata
acgaagatcaagagggatattgtgtttgctgccagtctttacctgtga
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