Garra rufa (doctor fish): 141299019
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Entry
141299019 CDS
T11039
Symbol
depdc5
Name
(RefSeq) GATOR1 complex protein DEPDC5
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
grf Garra rufa (doctor fish)
Pathway
grf04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
141299019 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141299019 (depdc5)
Membrane trafficking [BR:
grf04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
141299019 (depdc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
IML1_N
DEP
Motif
Other DBs
NCBI-GeneID:
141299019
NCBI-ProteinID:
XP_073685400
LinkDB
All DBs
Position
23:35007921..35041618
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AA seq
1388 aa
AA seq
DB search
MTVTMKANRSYKLVVHKKGFGGSDDELMMNPKVFSQVKLGDIVEIAHPNDEYSPLLLQVK
SLKEDLQKETISVDQTVAQAFKLRAYQDVIINIVDPKDVTLDLVELTFKDQYIGRGDMWR
LKKSLVSTCAYVTQKVELAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQ
MSCEMWDFDIYGDLYFEKAVNGFLSDLFAKWKEKNCSHEVTVVLFSRTFYSAKSMEEFPE
LQRASIRQDHEGRYYEDFYRVVAQNERRDEWTSLLITIKKLFIQYPVLVRLKGADGFLCG
HNSTAAQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQR
MIDNGIGVDLVCMGEQPLHAVPLFKLHNRTVHGDSRIGDDYNLPHWINHSFYTSKSQNSC
SCFTPRIKLAGKKAHAEKARSSKEHSLCAPKDTENSLPIQVDYDAYDAQVFRLPGPSRAQ
RSTNFSDSKNLQQMTLMRTPVNRGSFEDYSSPDPMPSFCCTVGVDWKSLTTPACLPLTTD
YFPDRQTLQNDYTEGCYDLLPHTDMERRDDESPVMSAHQVFEEFICQRLMQGYQIIVQPN
RKPQPAIAPPLSSSPLYSRGLVSRRKPEEEESIYWLSMGRTFHKVCLKDKIITVTRYLPK
YPYESTQIQYSYNLCPPHADAHFLPFWVEFSHERLEEYKWNYLDQYICSAGSEDFSLIDS
LKFWRTRFLLLPAGGARRVADGEGHWDVYGEGMGAGRDGLSGTGDWSLLDGFIRFLEGLN
RIRRRHRSDRIIRKGATIKGLQVTGPLSSHNPEPIAPPVGKKGTSALSALLELDQTQKSL
EEQQLAAQHGGKSCGPFSEAASVALTTTYVDSPRKDAAFILDFIRSPRSSYICHSQLPVE
QLPANHTEGGLSDKGGNQPLERPSAISQATGDPIPGTGAETGGQSGSSGLSLSSSSTLME
ILEAIKHPTTGVQLLPEQRGLPPNCFVSAEVVHWLVSTVENVATQGIAVEIMQKMLDEGL
ITHASGDAMRTFVYGFYFYRIVDKDNEKAPTTQLPPGGGSVWSAAALEDFALFQRKWFEV
AFVMEERRPCDLPAFLLPWLPSRPASYASRHSSFSRSFGGRSQAAALLAATVPEQKTVTL
DVDVNNRSDRTEWCSCYYHGNFSLNAAFEIKLHWMAVTAAVLFEMVQGWHRKAASCGFLL
VPVLEVPFALSSYLYGDPLRAQLFIPLNIQCLLKEGCDNLFEGFEPETYWDRMQLFQEAI
LSRFGFVQDKFSASAFNFPSENKPQYIHVTGTVFLQLPYAKRKYSSGQRRRRNSASSANQ
SLFGSEERVGYNWAYNTMLTKAWRTGVLGDEKLADRLLRDFTDFCANKDNRLATFWESCV
EKMNASAP
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgactgttaccatgaaggcaaacaggtcctacaaacttgtggtgcacaagaagggcttt
ggagggagtgatgatgagttgatgatgaatcctaaagtcttttctcaggttaaactgggg
gatattgttgagattgcacatccaaatgatgagtacagtcctctgctgctgcaggtcaag
agtttgaaagaagacctgcagaaagaaactatcagtgtagaccagactgtggctcaggcc
ttcaaacttcgcgcctaccaggacgtcatcatcaatattgtggaccccaaggatgtgact
ttggatctggtggagctcactttcaaagatcagtatattggacgaggagacatgtggaga
ctgaagaagagcttagtgagcacatgtgcatatgtgacacagaaagtagagcttgcagga
atcagggcccaggccagtgaattgtgggtgaaaggagagaaggtcacttgtggctacatt
agtgaagatacaagggtggtgtttcggtccacctctgctatggtttatatattcattcag
atgagctgtgagatgtgggactttgatatctatggtgatctttactttgagaaagctgtc
aatggtttcctctcggatctgtttgccaaatggaaagagaagaactgcagccatgaggtt
acagtggtgttgttctctcgaaccttctactctgctaaatcaatggaagagttcccagag
ctccaaagagcatcaatccgacaagaccatgagggacgttattatgaggatttctacagg
gtggtggcacagaatgaaaggcgtgatgagtggacctccctgctcatcaccattaaaaaa
ctcttcatacagtatcctgtgctggtgcgtcttaaaggagcagatggatttctgtgcggg
cacaattccactgctgctcaggggaattatctggaagctatcaacttgtctttcaatgtc
tttgataagcactacatcaaccgtaactttgaccgtacggggcagatgtcagtggtcatt
actccaggagtgggtgtgttcgaggtggaccgcttgctcatgatcctcaccaaacagcgc
atgattgacaatggcatcggtgtagatctggtttgcatgggagagcagcccctccacgct
gttccactcttcaagttgcataaccgcacagtgcatggagactctagaattggcgatgac
tacaacctgcctcactggatcaaccacagcttttacacgtcaaagagccagaactcatgc
agctgttttacaccacggatcaagctggctggaaaaaaggctcatgctgagaaagccaga
agcagcaaagaacattctctttgtgcccccaaagatactgagaacagccttccgatccaa
gtggactatgatgcatatgatgctcaggtcttcaggcttcctggaccttccagagctcag
aggtccaccaacttcagcgattcaaaaaacttgcagcagatgactctcatgagaacacca
gtgaaccgtggttcctttgaggattactccagtccagatccgatgcctagtttttgctgc
acggtcggggtggactggaagtccctcacgactcccgcctgcctcccactcaccactgat
tactttcccgaccgccaaaccctgcagaatgactacacagagggctgctacgacctgctg
ccacacactgacatggagagacgtgatgacgagtctccagtgatgtcggcccatcaggtg
tttgaagagttcatctgtcaacgtctgatgcaaggctaccagattattgtacagcctaac
aggaagccacagcccgctatagccccacccctcagcagcagccccctttattcccgaggg
ctggtgtctcgacgtaaaccagaggaggaggagagcatttactggctcagtatggggaga
acctttcataaagtctgccttaaagataagatcattaccgtcacccgctacctcccaaag
tatccctatgaatccacacagattcagtacagctacaatctgtgccctccgcatgcagac
gcccacttcctgccattctgggtggagttcagccacgagcggctggaggagtacaaatgg
aactacctagaccagtacatctgctctgctggctcagaggacttcagtcttatcgactct
ctgaagttttggcgcacacgcttcttgctgctgccagcaggcggagccaggcgagtggcg
gatggtgagggtcactgggacgtgtatggagagggaatgggggccgggcgggatggcctt
tctggcactggggactggtctcttttggatggatttatccgctttttggaaggcctgaac
aggattcgccgccgtcaccgatctgatcgaattattcgtaaaggagctactattaaaggc
ctccaggtcacaggaccgctctcatcccacaacccagaacctatagcgccccctgtgggg
aaaaagggcacctctgctctctctgcactcttggagctggatcaaacacagaagagttta
gaagagcagcagcttgctgctcagcatggtgggaaatcatgtggacctttcagtgaagct
gccagcgttgccctaacaaccacctatgtcgatagcccccgtaaggatgctgccttcatt
ttggactttattcgtagtccacgttcctcctacatctgtcactctcagctgccagtggaa
cagcttccagcaaatcacactgagggtgggttgtcggacaaaggaggaaaccaaccatta
gagagaccttcagctatatcccaagccacaggagacccaatcccaggcactggtgcagag
actggcgggcagtcagggtccagtggattgagtctttcctcatcttccacactaatggag
atcctggaagccattaagcatcccaccactggagtgcagcttttgccagagcagaggggc
ctgcctcccaactgctttgtcagtgctgaggttgtacattggctggtcagcactgtggag
aatgttgctacacagggcattgcagtagaaattatgcagaaaatgctggatgaaggtcta
attactcatgcctccggtgatgccatgcgaacgtttgtctatgggttctacttctaccgg
attgtcgacaaagacaatgagaaggcccctacgactcagctgcccccaggtggaggcagt
gtatggtctgccgcagctttggaggactttgccttgttccagaggaagtggtttgaggtg
gcctttgttatggaggaacgtcggccctgtgacttaccggccttcctgctgccctggttg
cccagccggccagcctcatacgcaagtaggcatagctccttcagccgcagcttcggagga
cgcagccaagctgccgcactgctagctgccacggttccagagcagaaaacagtcaccttg
gatgttgatgtgaacaatcgcagtgatcgcactgaatggtgcagttgctattaccatggc
aacttctccctcaacgctgcctttgaaatcaagctgcactggatggctgttactgctgcc
gtactctttgaaatggtgcaaggctggcacagaaaggcagcatcttgcggattcctgctt
gtacctgtgttggaggtgccctttgctttgtcatcgtacctgtatggtgaccctctccgt
gctcaattgtttattcctctaaatatccagtgcctgctaaaggagggctgtgataatctg
tttgaggggtttgagccagagacatactgggacaggatgcagttgtttcaggaggccata
ctctccagattcggctttgttcaagataaattctcagcatcagcttttaactttccatca
gagaacaaacctcagtacatccatgtaacaggtacagtttttcttcagctgccttacgca
aaaagaaaatactccagtgggcagcggcggcgccgtaactctgctagctctgccaatcag
agcctgtttggttctgaggagcgagtgggctacaactgggcctacaacaccatgctgacc
aaagcctggaggactggcgtgctgggggatgagaaactggccgaccgcctgctgcgggat
ttcactgacttttgtgccaacaaggataatcgactggcgaccttctgggaaagttgtgtg
gagaaaatgaacgctagtgccccttga
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