Garra rufa (doctor fish): 141299071
Help
Entry
141299071 CDS
T11039
Symbol
rc3h2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141299071 (rc3h2)
04121 Ubiquitin system [BR:
grf04121
]
141299071 (rc3h2)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
141299071 (rc3h2)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141299071 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_5
zf-RING_UBOX
zf-CCCH_4
zf-RING_2
zf_CCCH_4
zf-CCCH_UNK
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
141299071
NCBI-ProteinID:
XP_073685453
LinkDB
All DBs
Position
23:36805423..36850230
Genome browser
AA seq
1043 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDACSHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDVLPVNCALLQLVGAPVPEGEIVSVGSVEDTRHYEVCRICVEELALYLKPISGGKGVVT
LSQSTLSRPMQRKLVTLVNCQLVEEEGRMRAVRACRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLMHKSHMQSIIDKLQSPESFAKSVQELTIILQRTGDPANLNSLRAPLERLAGI
DHNPDAAAPSWTELESVLLAVKVVVYGLVEFIQNFSKKSNESPQAQPNSKYKTSMCRDLR
QQGGCPRGASCTFAHTQDELEKHRMRNRKASGVVRPFPSVPVVMAKAGTKGAVTGSEVKN
QEKDAPEDMSPTQLIPRGGDHQEDKTLHSSANGLPAVSLEQIPASQSQSSALASGLSTED
DCGLLKHGPVLTRAHPKIYYSQDQRPYDLSPYHQPAIPPHKSCNARFHRSSNVPESMLPP
SVGPLYPDQHPSIPPSDRLGPAHYVPPSTYPSMSHAHGMYTPVYDSRRVWRPPLYPRDGG
RSNSLPPEVFHSTVYQPPLRERFNSLDSPYCSTAEQRAAMHRDAYTRGVPLGYEELYRHK
QEQWVHHHGNMNRPSQSSPVFTVDVCSEHPEGVGGGRMTCKCHGGEESLAHYSPWSCSTI
SPFESEPHHLSTHSCSKQLEGESGGKRWLHLFEPYRRLKDEDPIIPFGEGPIISKWGAIS
RASRTGFHTTDPVQATASQGCAGTTSINFRDYSCHIGHSDLRWGPRGSDSSSHSSFLESD
QVAVSGLHVRRNSFSCGSKRGTDLLGKDGTESEPDRDIELELSALDMEDTETQDCNSEDS
METQRRSQNSHLSAVFGDPAASSQLENNLSDRMDAHLMKKMAFRKTLSPGDLSMGKMPMR
TCSPRPGDPPRPSPGPEMLLNGN
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcagctcaatggactgagtttctatcctgccccatttgctacaatgag
tttgacgcctgcagccacaagcccatcagcctgggctgctcgcacaccgtctgcaagacc
tgcctgcacaaactgcaccgcaaggcctgtccttttgaccagacggccattagcactgac
attgatgtgctgcctgtcaactgtgccctcctgcagctggtgggggcgccggttccggag
ggagagattgtgagtgtgggcagtgttgaagacacgagacattatgaagtgtgcaggatc
tgtgtggaggagctggcgttgtatctcaaaccaatcagtggaggaaaaggtgtagtgacc
cttagtcagagcacgctcagtagacccatgcagaggaagctggtgacccttgtgaactgc
cagctggttgaggaggaggggcgtatgcgggcggtccgggcgtgcagatctctgggcgag
cgcaccgtcactgagctgatcctgcagcaccagaacccacagcagctctccgccaacctg
tgggccgctgtgcgggcacgcggctgtcagtttctaggacccgccatgcaggaagacgct
ctgaagctggtgctgctggctctggaggacggctcggctctctcgcgcaaagttctggtg
ctgtttgtggtgcagaaactggaagcgcgcttccctcaggcgtccaagaccagcatcggt
cacgtagttcagctgctgtaccgcgcctcgtgctttaaggtgaccaaacgtgatgaagac
tcctcactcatgcaactcaaagaggagtttcgcacttacgaagccctgcgtcgcgaacac
gatgctcagatcgttcacatcgccatggaagcgggactccgtatctctccggagcagtgg
tcgtctctgctgtacggggatctgatgcataaatctcacatgcagtcaattatagacaag
cttcaatccccagaatcctttgcaaagagcgtgcaggagctcaccataatcctgcagaga
acaggagacccagccaacctcaacagcctcagagctcctctggagcggctggccggcatc
gaccacaaccctgatgcggccgctccatcctggacagagctggagagtgtgttattggct
gtgaaggttgttgtctatgggctggtggaattcatccaaaacttcagcaaaaagagcaat
gaaagccctcaggctcaacccaacagcaagtacaagacaagtatgtgcagggacttacgg
cagcagggcggctgccctagaggggccagttgcacttttgcccacacgcaggacgagctg
gaaaagcacagaatgaggaataggaaagccagtggggtggtgaggcccttcccgtcggtt
ccagtggttatggccaaagctggcaccaaaggagcagtcactgggtcagaggtgaaaaac
caagaaaaagatgctccagaggacatgtctcccactcagctcatcccaagaggaggagac
caccaggaggacaaaacactccacagtagtgctaacggactgcctgctgtcagcctagaa
caaattcctgccagtcagagccagtcctctgcgctagcttcgggattgtccacagaggac
gactgcggtctcctcaaacacgggcctgtcctcacaagagctcatcctaagatctactac
tctcaggaccagagaccatatgacctgtcaccctaccaccaacctgccattcctcctcac
aagtcatgcaacgctcgcttccatcgttccagcaacgtgcccgagtccatgttaccccct
tccgtgggccctctgtacccagatcagcacccctctattcctccttcagacagattaggc
cctgcccattatgtgccaccctcgacatacccctcaatgtcccacgcacacggcatgtac
acaccggtctacgacagcaggcgtgtgtggaggccaccgctgtatcccagggatggcggg
aggagtaactctctccctccagaggtttttcattccaccgtctaccagccgcccctccgg
gagcgcttcaactcgctggacagcccctactgcagcacagcggagcagagagcggcaatg
cacagggatgcatacacccgtggtgttcctctcggctatgaggaactctatcgccacaaa
caggaacagtgggtacatcaccacggcaacatgaacaggccgtcccaatcctcgccggtc
ttcactgtggatgtgtgttcagagcatcctgagggtgtaggtggtgggcgtatgacttgt
aagtgtcatggtggagaagagagtcttgcccactactcgccctggtcgtgcagcaccatc
agcccatttgagtcagagccccaccatttgtcaacccactcctgttccaaacagctagaa
ggggagagtggtggcaaacggtggctgcacttgttcgagccctacaggcgactgaaagac
gaagatcccatcattccttttggagaggggcccatcatctctaaatggggagccatctcc
cgcgcttcccgcactggctttcacaccactgacccggtccaggccactgcgtcgcaaggg
tgcgctggcaccacttctatcaactttagagactatagctgtcatattggtcacagtgac
cttagatggggcccacgtggttctgattcttctagtcactccagctttctagaaagcgat
caggtggccgtgtcagggctgcatgtaaggcgtaattccttcagctgcgggtcaaagcgg
ggcacagatctgctggggaaagatgggacggagagtgagcctgacagagacatcgagctg
gagctgtccgctcttgacatggaggacacagagactcaggactgcaactctgaggactct
atggaaacgcaaagacgctcccagaacagccacctctctgcagtcttcggtgatccagca
gcaagttctcagttggaaaacaacctgtctgacagaatggacgcccaccttatgaagaag
atggcattcagaaagaccctctctcctggagacctcagtatgggtaagatgcctatgagg
acgtgctcgcccaggcctggagaccctccacgacccagtccaggacctgagatgctgcta
aacgggaactga
DBGET
integrated database retrieval system
