KEGG   Garra rufa (doctor fish): 141299275
Entry
141299275         CDS       T11039                                 
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
grf  Garra rufa (doctor fish)
Pathway
grf04140  Autophagy - animal
grf04148  Efferocytosis
grf05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:grf00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    141299275 (vps11)
   04148 Efferocytosis
    141299275 (vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    141299275 (vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:grf04131]
    141299275 (vps11)
Membrane trafficking [BR:grf04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    141299275 (vps11)
   Hops complex
    141299275 (vps11)
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C Clathrin TPR_Vps41 Beta-prop_WDR3_1st zf-C3HC4_2 Beta-prop_WDR36-Utp21_1st zf-RING_2 zf-rbx1 zf_RING_Vps8_fungal zf-C3HC4 zf-C3H2C3 TPR_GEMI5 zf-ANAPC11 Beta-prop_EML_2 zf-RING_UBOX zf-RING_5 zf-RING_Vps41 zf_RING_Vps8 Rab11-FIP3 Paralemmin Glyco_transf_10
Other DBs
NCBI-GeneID: 141299275
NCBI-ProteinID: XP_073685734
LinkDB
Position
23:17197675..17206645
AA seq 927 aa
MAAFLQWRRFVFFDKETVKDPSENGKNFQLPVGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHNILVSVGQDEQGINPLVKVWNLDKKDSGSPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLSLHEGNCPITGLAFR
QAGKVTHLFVATLEKVQCYTLSVKEYPRIELDTHGCALRCSALTDPSQDSQFIVAGDDCV
YLYQPDERGPCFAFDGHKLLTHWHRGYLLLLTHNNKSPNKSDYGSRQTSPTEKHILTIYD
LDNKFIAYSAVFDDVIDVLAEWGSFYVVTRDNTLYMLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDNDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSNESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHMHHEWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKILMHHV
PESATILLKRLCTDYHPSKDSTDRDSLDRPVENKANSEEFIPVFANNPRELRAFLEHMIV
VDPFSSEGVYDTLLELRLQDWAHEQDPGKKKVLQEAALSLLRSDNTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDSEVCLWEQALGYFARKEENCK
AYISEVLQHIDDNNLMPPLLVVQTLAHNSTASLSVIKDYLINKLERETQQIEEDERKIKQ
YRDETSHLRSEIQELKTCAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCLESFAESEA
ECPTCTPENRKVMDMLRAQDQKRDLHDHFHRQLKCSNDGFSVIADYFGRGVFNKLTLITD
PPGGKSGAGNLEAEFNRDLLINTKRNV
NT seq 2784 nt   +upstreamnt  +downstreamnt
atggcagcgttcttacagtggagacgttttgtgtttttcgataaagaaacggtgaaagac
ccgagcgaaaatggaaaaaattttcaactaccggtgggaatatcggcctgtgattcaggt
cgaggacacattgtgcttggagatatggatgggcagatctggtttttgacccgctctctg
cagctatccagctttcaggcttataagctacgcgtgacacacctgtaccagctgaaacaa
cacaacatcctggtgtctgtgggtcaggatgagcaaggcatcaatcctctggtgaaggtg
tggaaccttgataagaaggacagcggcagtcctctgtgtacccggatattccctgccata
cctggaaacaaacctactgaagtgtcttgtctcagtgtacatgaaaaccttaatttcatg
gctataggttttacagatggcagtgttgtgctgacgaagggtgacatcaccagagacaga
cacagtaaaactctcagcctccatgaaggcaactgtccaatcacaggcctggctttccga
caggctggcaaagtcacacacctgtttgtcgccactttagaaaaagtgcagtgttacaca
ttatcagtgaaggagtaccctcgtatagaactggacacgcacggctgcgccctccgctgc
tcggcgctcacagacccctcgcaggactcacagttcatagtagctggagatgactgtgtg
tacttgtaccagcccgatgagagaggaccctgttttgctttcgatgggcacaagcttcta
actcactggcacagaggatacctgctgctactcacacacaataacaaatcacccaacaag
tctgattatggtagcagacagacatcccctacagaaaaacacatcttgaccatttacgac
ctggacaacaagtttatcgcttacagtgcggtgtttgacgatgtcattgatgttctggca
gaatgggggtctttctatgtcgtgacaagggacaacacattgtatatgctgcaagaaaaa
gacacacagaccaagctagagatgctgtttaagaagaacctgtttgtaatggccattaac
ttggctaaaagccaacatctggataacgatggtctgtctgagatattcagacagtatgga
gaccatctctatgtcaaaggggatcatgatggagctattcagcagtatattcgcaccatt
gggaagctcgagccctcatatgtaatccgtaaatttttggatgcacagaggatacataac
ttgacggcatacctacaggctctccacaggcagtcactggccaacgctgaccacactact
ctactgctcaactgttacaccaaactgaaggacagctccaagctggaagagttcataaag
agcaatgaaagtgaggtgcatttcgatgttgaaattgccatcaaggtgttacgtcaagcc
ggttatcacagtcatgctgtgtttctggccgagagacacatgcaccatgaatggtatcta
aagatccagctagaggatttgaagaattatcaggaggctttacgctacataggaaggttg
ccatttgatcaggcagaaagtaatatgaagcgctacggtaaaatcctaatgcatcacgtg
cctgaaagtgcgaccatcctcttaaaacgcctctgcactgactatcaccccagcaaagac
tcaaccgaccgagacagtctggacaggcctgtggaaaacaaggccaattcagaagagttc
atcccagtctttgccaataacccacgagagctgcgagcgttcctggaacacatgatcgtg
gtggatccgttttcatctgaaggagtttatgacactctgctagagctcagactacaggac
tgggcacatgagcaggatccagggaagaagaaagtcctgcaggaggcagcactgtccctg
ctgaggagtgacaacaccgtatttgacaaggccctggtgctctgccaaatgcacaacttc
aaggaaggagtgctgtatctgtatgaaaagggcaaactgtaccagcagattatgcattac
cacatgcaaaatgaggagtacgggaaagtcgtggaggcctgtaaacgctacggggacagt
gaggtgtgtttgtgggaacaggctctaggatactttgcacgcaaagaagaaaactgcaag
gcctacattagtgaagtcctgcagcacattgatgataataacttgatgcctccacttctg
gtggtgcagacgctggctcataattccacagcatctctatcagtcataaaagattatctg
ataaataaactagagcgggagacccagcagattgaggaagatgaaaggaagattaaacag
tatagagatgagacgtcccatcttcgttctgagatacaggaacttaaaacctgtgcaaag
atcttccaaaagaccaagtgcagcatgtgcaacagcccactagagctgccatctgtgcac
ttcctgtgtggccactctttccatcagcactgcctagagagctttgcagaaagcgaggcc
gagtgccctacctgcacccctgagaacagaaaagtgatggacatgttgcgcgcgcaagat
cagaaacgagatctgcacgaccatttccacagacagctgaaatgctctaacgacggcttc
tcagtcatcgctgactattttggccgtggagtgtttaacaaactcactctgataacggat
cctcctggaggaaagagtggagctgggaatctggaggctgaattcaacagagatctgctt
ataaacaccaagagaaatgtttga

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