Garra rufa (doctor fish): 141299368
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Entry
141299368 CDS
T11039
Symbol
vps36
Name
(RefSeq) vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
grf Garra rufa (doctor fish)
Pathway
grf04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
141299368 (vps36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141299368 (vps36)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141299368 (vps36)
Membrane trafficking [BR:
grf04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
141299368 (vps36)
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
141299368 (vps36)
Exosomal proteins of colorectal cancer cells
141299368 (vps36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Xre-like-HTH
MA3
Motif
Other DBs
NCBI-GeneID:
141299368
NCBI-ProteinID:
XP_073685826
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Position
23:complement(21018821..21037535)
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AA seq
382 aa
AA seq
DB search
MDRFVWTNGLLEMNETLVIQQRGVRLYDGDDKAKLDVGVVLLSTHRLLWRDQKNHECCIC
IPLSQVLFFEEQAAGIGKSAKIVIHLHPAPENKEPGPYQQSKYSYIKLSFKEHGQIEFYR
RLTEEMTQKRWENTPVSQPIPTGIGPKGGRTRAVGIVGIERKLEEKRKETDKNISEAFED
LSKLMEKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETHGSGTQ
YHIQLAKQLGDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDLVNACKMFESLKLP
LRLRVFDSGVMVVQLQSHSEEEMIASALDNVSDKGSLTAEEFAKLLGLSVLLAKERLLLA
EKMGHLCRDDSVEGLRFYPNLF
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggacagatttgtttggacaaatgggctacttgagatgaacgaaacgttagtaattcag
caaagaggagtgagactttacgatggtgatgacaaggctaaacttgatgtgggagtcgtt
cttctcagtacccatcgccttctctggagagaccagaagaatcatgaatgctgtatatgc
atacccttgtcacaggttctattctttgaggagcaagcagcaggcatcggaaagagtgcc
aagattgtcattcacctgcacccagccccagaaaataaggagccgggtccttaccagcag
agcaagtactcttatataaagctgtccttcaaggaacatgggcagattgagttttacaga
cgtctgactgaagagatgactcagaagcgatgggagaatacacctgtctcacagcccatc
cccacaggaataggacccaagggaggaaggacacgcgcagtggggattgtgggtattgaa
cggaagttggaggagaaaagaaaagagacagataaaaacatttctgaggcctttgaggat
ctcagtaaactaatggaaaaggccaaagagatggtggaactctccaaatccattgccaac
aaaatcaaagacaaacagggtgacatcacagaagatgagactatccgcttcaagtcttat
ttgctaagtatgggcatagccaacccagtgaccagagagacgcacggctcaggcacacag
taccacatccaacttgccaaacagctgggagacatgctgcaggccccactggaggagcgt
ggaggaatgatggccctcactgaagtgtactgtttggttaacagagcccgtggaatggag
cttctctctccagaggatttggtaaacgcctgcaagatgtttgaatccctaaagcttcct
ctacggttgcgagtatttgacagcggcgtgatggtagttcagctccagtcccacagtgaa
gaggaaatgattgcctcagctctagataacgtgtctgataaaggctccctcacagccgaa
gagtttgccaagctgttgggactgtcagttctcctcgctaaagaaaggttgttattagct
gaaaaaatgggtcacttgtgcagagacgattcagtggaaggtctgcgtttttatcccaac
ctgttctga
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