Garra rufa (doctor fish): 141299527
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Entry
141299527 CDS
T11039
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
grf03009
]
141299527 (ddx55)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141299527 (ddx55)
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
Pre-60S particles
Helicases
141299527 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
Cas3-like_C_2
SBF_like
TFIIF_alpha
YbjM
Motif
Other DBs
NCBI-GeneID:
141299527
NCBI-ProteinID:
XP_073685995
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Position
23:complement(4895807..4905740)
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AA seq
596 aa
AA seq
DB search
MENITDGKWESLPVKLSDSILQTLKELKFTYMTPVQSACIPLFMGNKDVAAEAVTGSGKT
LAFVIPALEILLKRNEKLKKMQVGALIITPTRELALQISEVMGRFLQGFPQFRQILLIGG
SNPIEDVEKFKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMG
FEASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRIAVKEKGVAASSVQKTPA
RLSNYYTICRAEEKFNTLVAFLRQHKHEKQLVFFSTCACVEFFGKALEVLIKNVSIHCLH
GKMKHKRNKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTA
RIGNQGNALVFLLPMEETYVNFLSINQKCPLQSYPPVKDVVDVLPKLKAMALGDRAMFEK
GMRAFVSHVQAYAKHECSLIFRIKDLDFAALARGFALLRLPKMPELRGKTFPGFIQEAVD
TNTIRFKDKNREKQRQKKLAELKEKEPLKKNFIKNKSWSKQKNKKDKKKKRSSKRKLDEE
SDVDDEDLNELLSDTRLLKKLKKGKISEEDFDKHMSSAGSSHPKRAKADSSDGDGE
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacattaccgatggaaaatgggagagtttgccagtgaaattaagtgatagcata
ttacagactcttaaagagctgaaatttacatatatgactcctgttcagtccgcctgcatc
cctctttttatgggtaataaagatgtggctgctgaagcggtgactggcagtggaaaaacc
ctggcgtttgtgattcctgcattagaaattctcttaaagcgaaacgagaagttaaaaaag
atgcaggttggtgcattgatcataacacccacccgtgagctggcactgcagatcagtgag
gtgatgggacgatttctgcagggatttcctcagtttagacagattcttttaattggtgga
agcaaccctattgaggacgtagagaagtttaagactcagggagccaatatcattattgca
acccctggccgattggaggacatgtttaggaggaaggccgatggacttgatttggccacc
gctgtgaagtctctggacgttcttgtcctggatgaggcagacagattactggacatgggc
tttgaagccagtctaaacaccattctggggtatttacccaagcagcggcgtacagggctt
ttttctgccacacagacacaagagctagagaagttggtgagggctggtctacgcaaccct
gtgagaatcgcagtgaaggagaaaggagtggcggcctcgagcgtgcagaaaacaccagcc
agactcagcaattattacacaatatgtcgggcagaggagaagtttaacactttggttgcg
tttctcaggcagcacaaacatgagaagcagcttgtgttcttcagcacctgtgcctgtgtg
gagttcttcggtaaagccctggaagtcttgatcaagaatgtcagcatccactgcctccat
ggaaaaatgaaacataaacgaaacaagatctttgcagatttccgggcgctgaaaagtggg
attctagtgtgcacagacgtcatggcgagaggtattgacatccccgaagtgaactgggtg
ctacagtacgacccaccaagcagtgcaagttcctttgtgcatcggtgtggacgaaccgca
cgcattggaaaccagggcaatgcactcgtctttcttctgccaatggaagagacgtatgta
aatttcttgtccattaatcaaaagtgtcctcttcagtcttatcctccggtgaaagatgtg
gttgatgttcttcctaaactgaaagcgatggctttaggtgacagagcgatgtttgagaag
ggcatgagagcctttgtgtcgcatgtgcaggcgtacgccaaacacgagtgtagtctgata
tttcgcattaaagacttggattttgctgctctggcccgtggctttgctctcctccgtttg
cccaaaatgcctgaactgaggggaaagaccttcccgggcttcatacaggaagctgtagac
acaaacaccatccggtttaaagataaaaacagggaaaaacagagacaaaaaaagctggcg
gagctgaaagagaaagagccattgaagaagaacttcatcaagaataaatcctggtccaag
cagaagaacaagaaggataaaaagaaaaagaggagttccaaaagaaaactggatgaggaa
tcagatgttgacgacgaagacttaaacgagcttttaagcgacacgcgtctgctgaagaag
ctcaagaaaggaaagatcagtgaagaggactttgacaagcacatgagttcagcgggcagc
tcacatcccaaaagagcaaaagcagacagttctgatggagacggagaatga
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