Garra rufa (doctor fish): 141299753
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Entry
141299753 CDS
T11039
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
141299753 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
grf01009
]
141299753 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
grf04515
]
141299753 (pcdh1a)
Protein phosphatases and associated proteins [BR:
grf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141299753 (pcdh1a)
Cell adhesion molecules [BR:
grf04515
]
Cadherins
Protocadherins
141299753 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Fibulin_C
PepSY
PDGLE
Motif
Other DBs
NCBI-GeneID:
141299753
NCBI-ProteinID:
XP_073686239
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All DBs
Position
23:23966032..24108850
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AA seq
1189 aa
AA seq
DB search
MDLPVVLFLLWGLLLDLSGAVGGILYRVHEEQPPSTLIGSLAADQGLPDTGHLYKLEVGT
PYLRVDGKTGDIFTTEIPIDRETLKDCRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIEV
QDINDNTPQFPSPVLTLSVPENTHVGALFSIPLATDKDTERNGVADYTLTAGPEAVALFG
LQVAEDRGEKLPQLIVLGSLDRERKDSYDLTIKAVDGGNPPRYSSALLRVVIADANDNAP
QFEKSSYEAEVAENSPVGHSVLQVKANDSDLGPNGEIEYTLHQAIDPVPKLLRIDRSSGI
IYVKGPLDREEINNLKFYVVARDRGPSPKSSKTYVSIDVTDQNDNAPAVEIRGIGLVTHS
DGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSVDNKRKYFL
QTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDTNDNSPVFSPTLFEVEFAEE
NQPGEKVVDVVASDADSGTNAELVYSIIADSSTRGLFEIDPSSGEVRARSPLDREHKERY
EFRVTAADKGVPSHRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQD
MDEGENAQVQLSVEPDVGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGDPPRSSY
VGVTINVLDENDNAPVVTKPSNSSFIRLSPMAAPDSVVEVVEAEDIDSGSNAELIYSIAG
GNPHDLFYISPSNGEITLTKELTRKHSGLHRLVVKVSDRGKPSRHAIALVHIYVNETIAN
VSHVEALVGHSLYTPLDMDIAGDPDYGLAAQRSNIVYGSLAGVAGVVTVIVVVVFIRHRL
QREAKSGYQAGKKETKDLYAPKQGPKSGKGRKGKKGKPPKSPKPLGEDEEVSLQKSLKFN
LDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQELPAANT
FVGTGGDDNSTGSDQYSDYSYKTNQPKYSTKTLPHRRVTFSTANPMQDQQDSSQQSYYDS
GLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPETDIRSLPDVAMTGNCS
QECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSVRLGGEENRPR
LPPSRSAYSSSDHAPSDHAPLEEVPLSVTSEFPPTSPPSNHASKREIYL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatctccctgtggtgttgtttctgctgtggggactgttactggacttgagtggtgca
gtgggtggcattctataccgcgtacatgaggaacaacctccgagcacactcattggcagt
ctggcggctgaccagggcctgccagacactggacacctgtacaaactggaggtgggcact
ccctatctgcgggtggatggcaaaactggagatatctttaccactgagatccccatagac
agagagacactgaaggattgtcgtaataaaggcaagccctgctttctggagtttgaggtg
tccgtcacagaccttattcagaatcagagtccacggctgatagagggaagaatcgaagtg
caggatattaatgataacacaccacagttcccctcacctgtccttaccctctcagttcca
gagaatacccacgtgggggcactcttctcaattccactggccactgacaaagatacagag
agaaatggagtagctgactacaccttaacagcaggaccagaagctgtagcactctttggt
ctgcaagttgcagaggacagaggtgaaaaattgcctcagctcattgtattgggaagcctt
gatcgagaacggaaagactcctacgatctcaccatcaaagctgtggatggaggcaatcca
cctcgctacagcagtgccttgctgagggtcgtcattgctgatgccaatgacaatgcaccc
caatttgaaaaatcctcctacgaagcagaggtcgcagagaacagcccagttggacactct
gtgttacaggtgaaggctaatgactcagacttgggtcctaatggtgagattgaatacaca
ttacatcaggccattgatcctgtgccaaaacttctccggatagaccgctcatcaggcatc
atatatgtcaaaggcccattggatcgtgaggagatcaacaatttgaagttttacgtcgtt
gcacgagacagaggcccctcacccaaaagttctaaaacgtatgtttctattgatgtgact
gaccagaatgacaatgcaccagcagtggagattcgaggcattggtcttgtgacccacagt
gatggagtagcaaacatttcagaggatatgcctgtaggcactgcagtggcactggtacag
gtttcagacaaggatgagggagagaatgccgtggtgacctgtgtggttgctggcgatgtt
cctttccagcttcggccagcaagcgattcatcagttgacaacaagaggaagtattttctg
cagaccacaacacctctggactatgaaagagttagagactaccgggtggagatagtggca
gtggattctggcaatcccgctctgtccagcactaactcgctaaaagtccaagtgactgac
acgaatgacaattcccccgttttctcaccgactctgtttgaagtagagtttgctgaggaa
aaccagccaggggaaaaggtggtagatgtagtcgcctcagatgcagacagtggcactaat
gcagagctggtctacagcattattgcggactcttcaacaaggggactttttgagattgac
cctagctcaggtgaagtacgtgctcggagccctcttgatcgtgagcacaaggagcgctac
gagttccgtgtaactgcagcagataaaggggttcccagtcacaggggtactgccacagtt
gtaatcaaggtacttgatcggaatgacaacgatcccaagttcatgctgagtggatacagc
ttctcagtcttggagaacatgccaccccttagccctgttgggatggtaacagtacaggac
atggacgagggtgagaatgctcaagtgcaactttctgtggaaccggatgtaggcaaattt
gtgatccagaatggtactggcactattttgtccagcatctcatttgacagagagaaggag
agcagttacacattccgcctgaaagctgtagatggaggggacccgcccaggtcatcctac
gttggagtgaccatcaatgtcctcgatgagaatgataacgctcctgttgtgaccaaacca
tctaactcatcctttatacgtctgtctcccatggctgctccagacagtgttgtggaagtg
gtcgaagcggaagacattgattccggttccaatgctgagctaatatacagcattgctggg
ggaaatccacatgaccttttttacatctctccatctaatggcgagatcacattaaccaag
gaacttactcggaaacatagtggtctgcatcgactggtagtaaaagtgagcgacagaggc
aaaccatcccgccacgctattgccttggtacacatttacgtaaatgaaaccattgccaac
gtaagtcacgtggaggcacttgtggggcatagcctgtacaccccactcgacatggacatt
gcaggagacccagattacggtttggctgcccaaagaagcaacattgtatatggcagttta
gctggagtggcgggagtggtcactgtgattgttgtggtggtcttcatcaggcatcgcctt
caaagagaagctaagagtggttatcaggctggcaagaaggagaccaaagatttgtatgct
cccaagcaagggccaaaaagtggcaaggggagaaagggtaaaaagggtaagccaccaaag
tcacctaaacctcttggagaggatgaggaagtcagccttcaaaagagtttgaaatttaac
cttgatggggtcaacgacagccccaggatccatttgccgctgacatatccgcctggaagc
cctgacctaggcaggcactaccgttccaattccccattgccctccatccagctccaggcc
cagtccccatctgcctcccaaaagcatcaggctgtccaggagctccctgctgccaacacc
tttgtgggaacaggcggtgatgacaactccaccggctcagaccagtactcggattacagc
tacaagaccaatcaaccaaaatacagcacaaaaacgctcccgcatcgcagagtgacgttc
tccacggccaatcccatgcaagatcagcaggactcgtctcagcagagttactacgatagt
ggtctggaggagtccgagacccccagcagcaagagctcttcgggaccacgtatcggcccc
ctcgccctgcccgaagaccactacgagcggaccacccctgatggcagcatcggagagatg
gaacacccagaaaccgatattcgctcgctgcctgatgttgccatgacgggaaactgcagt
caggagtgcagcgagctgggccactcagacgcctgttggatgcccggtcagccttcgccc
gtccgcaagacccgcaacccccctaaactgtccacgtttgtgccttatcaggagaggggg
agcctgggacgcctggccaatgggagcgtgaggctgggaggagaggagaacaggccacgc
ctcccaccttcccgtagtgcctactccagtagtgaccacgcccccagtgaccacgcccca
ctggaggaggtgcctctgagcgtgacatcagagttcccgcctaccagccccccctccaat
cacgcctcgaaaagagagatatacctgtga
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