Garra rufa (doctor fish): 141300129
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Entry
141300129 CDS
T11039
Symbol
spata13
Name
(RefSeq) spermatogenesis-associated protein 13
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
grf Garra rufa (doctor fish)
Pathway
grf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
141300129 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141300129 (spata13)
Membrane trafficking [BR:
grf04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
141300129 (spata13)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_2
SH3_1
PH
SH3_9
Motif
Other DBs
NCBI-GeneID:
141300129
NCBI-ProteinID:
XP_073686544
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All DBs
Position
24:complement(21805012..21831432)
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AA seq
1248 aa
AA seq
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MIKAPSLDQQGSSHNNDPQSDSFTEEQLMNPKLRSSCTVHMQPEPCYEENRLNRLNSQAQ
TVPVIADGQAKLYPSRTVRLFSTQTKCEDGASLREPPVTPQAWSGLASFRVMGSFKKLRT
SVLQGIQNRSNAMAAGQERNPSFMDEDGGSFFVTKREVASSQIQENEKVSNGTARTRKTS
SVSDEDDCEEEVSGFQRNSHFSQSIRKAYGAGRIALLDIVKTESPSTSEPDPSSTVDSVL
PCKNLETQENVKILKRLSKSADNLHIFKSPFRRRVASAEPQNPECPNTIILQRTTSSSSV
DLQENDSSTRQTPRTRGHLQKLVGSLTDLTVKRKNTPGPGSKPPLSPLSQLHDDYSRRIP
CVPTSGRQRRPSPTPSKAQQANTYQHNPTLHPAPSCPTIFSSSMGDSLEPSSKTTALISN
YVQVAVSSTDFCSDAPDCLLEKYCEPMECHQNGMNNHYSQVPKQCSSPSQKQTVNGVNVN
LECLWTDERENDDLEASSEIAKAFLRSDGTSATAASSVTNTCSSESPLVTPTTPISPPFA
SDSPTSVEPRKRTGRCRPRPVSDYGHLASSKYCIPEEDRESDTMDYTSQKDYNTNGSYIE
SSRPENGHVCTQTESRKRRPISVIGGVDLFSSPTAEQKDDTESLPSPVCRPPVPSHRVPP
YRAVSARLRPCVFSQSTPIGLDRMGRRKGRRVLSDTDGSSDPMLDDSVSEEDGSFEELTE
GTPYLQPEVDFFTLNQYIQSGHAVYAEALWDHVTMEEQELALKAGDVIRVLDVREQEWWW
GAVGDHEAWFPSSFVRVRVNQEDSSSDSVEIAQDAEESVPPDAHKQNSEHRQQMRANVVK
EIMDTERVYIKHLKDICEGYIRQCRKHPGMFTDAQLKTIFSNIEDIYRFQRTFLKDLEKK
YSPENPHLSEIGSCFLQQEDGFAIYSEYCNTHPVACAELQRLMKQSRYKHFFEACRLLQQ
MIDISIAGFLLTPVQKICKYPLQLGELLKYTPKDHSDYAGVCAAHKAMKNVASLINERKR
RLESIDTIAHWQVAILHWAGDDMLKRSSELIHSGELTRIVRPGKTQQRSYFLFDHQLVFC
KKDVLRRDLLHYRGRMDTDLLEPIDLPDGRHTEMGLLKNAFLLRHAENLNVLCVLCCKKN
QDKQRWLQAFGQERRRVQEDQEMGMEITEAQRKQAVHNARKSKQGKMKKMNYSDHPGPPH
HQPLHPLHQRHVTVPTSIPQQQVFSLAEPKKKPSHLLYSLARSALFRK
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgataaaggcaccatcgttggaccagcagggctcctctcacaacaatgacccgcagagt
gactctttcacagaggagcagctgatgaatccaaaactgaggtctagttgtacggtccat
atgcaaccagagccttgctatgaggagaaccggcttaatagactgaattctcaagcccag
actgttccagtgattgccgatggccaggccaagctgtatccctccaggactgtacgtctg
ttttccacccagacaaaatgtgaggacggtgcttcgctcagagaaccacctgtcactcca
caggcttggtctggattggctagtttccgtgtcatgggttctttcaagaaactacggact
tctgtgctgcaaggaatccagaaccggagcaatgcgatggctgccggtcaagagagaaat
ccgtctttcatggatgaggatggaggtagcttcttcgtaacgaaacgagaggtcgcaagc
agtcaaatccaggaaaatgagaaagtatcaaatgggacggctcggaccagaaagacgtct
tcggtttcggatgaagatgattgtgaggaggaagtgagtgggtttcagaggaattcacat
ttctctcaaagtatccgcaaggcttatggagcaggacggattgcattgcttgacatagtc
aagacagagagtccgtcgaccagtgagcccgaccctagcagcactgtggactctgtctta
ccttgcaagaaccttgagactcaagaaaatgtcaagattctcaaaagactaagcaaaagt
gcagataatctccacatcttcaagagtccttttagacgcagggtcgcctcagctgagcca
cagaatccagaatgccccaatactataattcttcagaggaccaccagttcttcatcggtt
gacttgcaggaaaacgattcaagtacacgtcaaaccccgaggacacgtggacatttgcaa
aagcttgtcggtagtttaaccgaccttacagtcaagcgtaaaaacacacctggccctggc
tccaaaccacctctgtcacctcttagtcagctacatgatgactactcccgcagaatccca
tgtgtaccaacgagtgggcggcaacggaggccttcacccacgcctagcaaggcccagcag
gccaacacttaccaacacaatccaactttacaccctgcgccctcctgtcccaccatcttt
agctcctctatgggtgactctctggagccttctagcaaaacaactgccctaataagtaac
tatgttcaggtggctgtgtcctcaacagatttctgttcagatgccccagactgtctgctg
gaaaaatactgtgaacctatggagtgccatcaaaatggaatgaataaccactactctcaa
gtgcccaagcagtgctcaagccccagtcaaaagcagacagtcaatggcgttaacgttaac
ttggagtgtctatggactgacgagagggagaatgatgatctggaggcttcgtcagaaatc
gcaaaagcttttctcagaagtgatgggacctcagccactgctgcttcatctgtcacaaac
acctgttcctcagaatcccccctagtaactccaacaacaccaatctctccaccctttgcc
agtgactctcccacttctgtagagcccagaaaaagaacaggtcgctgcagacccaggcca
gtgtctgactatggccacctggccagctcaaagtactgcatcccagaggaggacagggag
tctgacactatggactacacttcccaaaaggactacaataccaatggcagctacatagag
agcagcagacctgagaatggtcatgtgtgcactcaaacagagagcagaaagagacgtccg
atctctgttattggaggtgtggatctgttttcatccccaactgctgagcagaaggatgac
actgaaagcttaccttctccggtatgccgtcctccggtgccctctcacagagtgcctcca
taccgggccgtgtctgcccgtttgagaccctgtgtcttctcccaaagcacacctatcggt
ctggataggatgggacgccgtaaagggcgaagagtgctcagcgatacagatggcagctct
gatccaatgcttgatgatagtgtgagtgaggaggacggcagctttgaagaactgactgaa
ggaacaccatatctacaaccagaagttgattttttcacgctaaatcagtacattcaatcg
ggacatgccgtgtatgcagaggctctgtgggaccatgtcacaatggaagagcaggagctg
gctttaaaagccggggatgtgatccgggttctggacgttcgggaacaggaatggtggtgg
ggggcagtgggtgaccacgaggcctggtttccctctagttttgttcgagttcgggtgaat
caggaggattcaagcagtgatagtgtggaaatcgcacaggatgcagaggaatccgtccca
ccagatgcacacaagcaaaactcggagcaccgacagcagatgagagctaatgtggtcaaa
gagatcatggacacagagcgcgtatatatcaaacacctcaaagatatctgtgagggatat
atccgtcagtgtagaaagcaccctggcatgtttactgacgcacagctaaaaacaatcttt
agcaacattgaggacatctacaggttccagagaacgtttctcaaagatctagaaaagaaa
tacagccctgaaaaccctcatctcagtgagattggctcctgctttcttcaacaggaggat
ggtttcgccatatactctgaatactgtaatacacatccagtggcatgtgctgaattgcag
cgattgatgaaacaaagcagatataaacacttcttcgaagcctgtcgtctcttacagcag
atgattgacatttccattgctggcttcctactcacaccagtacagaagatttgtaaatac
cctcttcagctgggagagcttttgaaatacacacccaaagatcacagtgactacgcaggg
gtgtgtgctgcacataaagcaatgaagaacgtagcaagtctgataaacgagagaaaaagg
cggcttgagagcatcgacaccatcgctcactggcaggtggccatcctccactgggcgggt
gatgatatgttaaaacgaagctctgagctcatccactccggcgagttaacgcggatagtg
cgacctggtaagacgcagcaacgcagctacttcctgtttgaccaccagctggtgttctgt
aaaaaagacgtcctgcggagagacctgctacactaccgtggacgtatggacactgaccta
ctcgagccaatcgacctgcctgatggacggcacactgagatggggctcctgaagaatgcg
tttctgctacggcatgcagagaacctgaatgtgctgtgtgtgttgtgctgcaaaaagaac
caggataagcagcgatggctgcaagcgtttggccaagagcgcagacgggtacaggaggac
caagagatggggatggagattaccgaggcacagaggaagcaagcagttcacaacgccagg
aaatccaaacaaggaaaaatgaaaaaaatgaattattctgatcaccctgggccccctcac
catcagccgctacatcctctccatcagcgtcatgtgaccgtcccaaccagcatccctcag
cagcaagtcttctctttagcagagccaaagaagaaaccatcccacctgttgtactcgctt
gcacgcagtgccctcttcaggaaatga
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