Garra rufa (doctor fish): 141300166
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Entry
141300166 CDS
T11039
Name
(RefSeq) RB1-inducible coiled-coil protein 1-like
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141300166
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
grf01009
]
141300166
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141300166
03029 Mitochondrial biogenesis [BR:
grf03029
]
141300166
Protein phosphatases and associated proteins [BR:
grf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141300166
Membrane trafficking [BR:
grf04131
]
Autophagy
Autophagosome formation proteins
ULK complex
141300166
Mitochondrial biogenesis [BR:
grf03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
141300166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
DUF6950
Motif
Other DBs
NCBI-GeneID:
141300166
NCBI-ProteinID:
XP_073686599
LinkDB
All DBs
Position
24:32405264..32434091
Genome browser
AA seq
1622 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIAIQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILSDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCLFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLRKFDTAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRQSYRESVEKSTSPHPRTTDEEDENEDELGK
TSTQSAILCPADSQKSRKSPSPVSASGEASSQASSSPQDRLKSSCSLKAALEEEEEFLER
VTPCFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLTECRETITKLDNQNM
KAIKGLEDRLYALDQMIASCKRLVNEQQELAQGFLANQKRAENLKDTSVLPDLCLSHANQ
LMIMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTEL
LERVRVVDALSTVPQMYCIAVVEVVRRKMFIGHYRQWANALVKDGKNLYEAEKVKRETFG
KLFRKSFLRNRLFRGLDSWPPSSFCTRKPRKFDFELPDISLTDLQYLKSCCPTEVQPYLR
VPTLCDFEPLNQHVEVLHQLVQAAQSVDEMSQTITDLLNEQKFSCSQSAQRSTALTPRSE
STTEITSTSTKTLSTLSLKAPDCHPMALPGPLEDLSPDSIDAQTFDFETIGHPNMDPVLQ
QGSLDLDSLAESPESDFMSAVNEFVIEENLMSPNPISDPTSPEMMVESLYSSVINAIDSK
RIQDTTTLEKENSKIAALKLSADRYRSAAEESQNNLRKVKDDLYHFRGLVLKEQRDFGFA
LKTMTVEVRHTLNSVRYCQEEELRENQQTNLQSLKDDHEKQIQTLTEELEGNHKIVRDVQ
RAMLELEGLVERKEKEISQLESERERSMQELQDLHKQTTQDLEEKILKQNEELKAALLSK
DELAGQLEKLHFEIEQSQQKIRQEMEKAEKVHLQELEVRLKQHHQAELESLRLEKESALD
KLVQENLVKLRDLVDSHSAELKERDGRSKDLESRITELADARCKLEVEMALKEAEMEDMR
LQYEEAKSTQEEVLKAELATQTTTLHMQIDTLNKQLQQKNEEYEVGLAELRALMRLEKDH
CISELVDRHEEQSILLRHEFSALKQKSQDAEKDCEERVQKIHRDHQDQLDALQREKKDEQ
KAFQEKEQELRTVIGDLQAENTLLSGRLEQERVEALERAEKEKEEAVKAALQEALRDFQS
QKVETETRLLGQIELLENQLKDRQSTDIVAPTVEMTETGMETSAALSLESGQWTEEKASL
LAKLELLERTKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEHIINDLSEKLKNLTQQQE
KDKGLIETLSEDRASILQEKKQMEEELNRLRSTALVSSSFFPPNPIPVITEAHGACGLAH
MEAFSPSTTDPERLASMAAFKDEERVESAVEASMMTVHDNSMLSEEKQRILILERTLHMK
EEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYF
LHSESLTALDLKPATGATRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNK
KV
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgtttcaagtcaacaacggaagcacattgacatttgacactgaactt
gccgtccaaactgttttggaccttaaacatgccattcaggccaaatataaaattgcaatc
cagcaccaggtgctggtggtcaacggaggggagtgtatggtggcagagaggcgcgtgtgc
agctacagcgccggaacggacaccaacccgatcttcttattcaacaaagagatgatcctg
tcagaccgagctccaaccatccccaaaacgaccttctccatagagaatgagatggagctg
aaggtggaggagtcactcatgatgcctgccgtctttcacaccgtcgcttcccgcactcaa
ctggctgtggaaatgtttgaggttgccaagaagctttgcttgttctgcgagcgtctggtc
catgacgaacaccttcagcaccagggatgggcggccatcatggctaacctggacgactgc
actctatcctatcaaaagcttcttaggaaatttgacactgcttatacaaattaccaacag
gattttgaagacatcaaattaaaactcacaaagcttggcactgctgtctcagtcatggcg
aagattccactcctcgagtgtttgactcgacagagctacagagaaagcgtggagaagtcc
acctcccctcacccaagaaccacagatgaagaagacgagaatgaggatgaattaggcaaa
acatccacccagtccgctatcctttgtccagctgacagccagaagagccgtaagtcaccc
tcgccggtctctgcatcaggagaagcgtcgtcccaggcgtcctcctctcctcaggacaga
ctgaagagcagctgtagtctaaaagcagctctagaggaagaggaggagtttctggagaga
gttacaccctgtttcaacgtcacgctgttggattggatcaacgttcaggacagacctaat
gatgtggagtcagtagtgaggaagtgttttgactcaatcaacaggctcgacccacgaatt
atccagccctttctaactgaatgccgcgagacgattaccaaattggataatcagaacatg
aaggccatcaaaggtcttgaagacagattgtatgctcttgaccaaatgatagcaagctgt
aaacggttggtcaatgaacagcaggaacttgctcagggatttcttgccaatcagaagagg
gctgaaaacctgaaggacacctcggtgctgcctgacctgtgtctgagtcacgctaaccag
ctgatgatcatgctgaccaatcacaggaagctactagacatcaagcagaagtgtaccact
gccaaacaggagctcgccaacaaccttcaagttcgtctcaaatggtgctgctacgtgatg
cttcacgctgatcaggatggagagaagctgcaggctctcctgaggctgctgacggagctg
ctggagcgcgtgcgggtggtggatgcgctcagcacagtgccacagatgtactgtatcgcc
gtagtggaggtggtcagacgcaaaatgttcataggacactacagacaatgggccaatgcc
cttgtcaaagatgggaaaaacctctatgaggcggaaaaagtaaaaagggaaacctttgga
aagctcttcaggaaatcgttcctcagaaaccggttgtttcgaggactggactcatggcca
ccgtcttcattttgcacccgaaagcctcgaaagtttgactttgagcttccagatatttcc
ctgactgacctgcagtatctcaagtcctgttgtcctaccgaggttcagccttacctcagg
gtccccacactgtgtgactttgagcctctgaaccagcatgttgaggttctccatcagctg
gttcaggctgcgcagagtgtggacgagatgtcacaaactatcacagacctactaaatgaa
caaaagttttcctgtagccagagtgctcaaagatctactgcgttaacacccagatctgaa
agcacaactgaaatcacctctacctccaccaaaacattgtccactctaagtttaaaagct
ccggactgccatcccatggcgcttcctggtcccttggaggacctatcacctgacagcatc
gatgcccagacctttgactttgaaaccattgggcaccccaatatggatcctgtattacag
caaggctcattggacttggactcattggctgaaagtcctgagtcagacttcatgtcagca
gtaaacgagtttgttattgaggagaacttgatgtcacctaatcccataagtgatccaaca
agcccagagatgatggtggagtctctttactcttctgtcattaatgcaatcgatagcaag
cgcatacaagacactactacgcttgagaaggagaactcaaagattgcagcgctcaagctg
tcagcagacaggtatcgttccgctgcggaagagtcccagaacaatttgagaaaagttaaa
gatgacctttaccactttcgaggtcttgttctgaaggagcaacgagactttggattcgcc
ctgaaaacaatgactgttgaggttcgacacactctcaacagtgtcagatactgtcaagag
gaggagctgagagaaaatcaacaaaccaatctacagagtttgaaggacgatcatgaaaag
caaatacaaacccttacggaagagctggaaggcaatcataagattgttcgagatgtccag
agagcaatgctggagttggaggggctcgtggagcgcaaggagaaggaaatatcccagctg
gagagtgagagggaacgctctatgcaagaacttcaagatcttcacaagcaaaccacgcag
gaccttgaggagaagatactgaagcaaaacgaagagctgaaagctgcgttgctctccaag
gacgaactcgctgggcagctggagaagctgcactttgagatcgagcagagccaacagaaa
atcagacaggagatggagaaggcagagaaggtgcaccttcaggaactggaggtacggttg
aaacaacatcatcaagcagagctggaatctctcagattggaaaaagaaagtgcacttgac
aaacttgtccaagagaacctggtgaagcttagagatctggtggattctcattctgccgag
ctcaaggaacgcgatggacgctctaaagacttggagtctcgcattacagaacttgcggat
gcacgctgcaaactggaagttgagatggctcttaaagaggctgaaatggaagacatgaga
cttcagtacgaggaggccaaaagcactcaagaagaggtgttgaaagcagagcttgctaca
caaacaaccaccttgcatatgcaaatcgacacgttgaacaaacagctccagcagaagaat
gaagaatacgaagtcggcctggccgagctccgagcgctcatgaggttggaaaaagaccac
tgcatttctgaacttgtggatcggcatgaagagcagagcatcctgctccgccatgagttt
tcagctctcaagcagaagtcgcaggatgcggagaaagactgcgaagaacgggtccagaag
atccatcgcgatcaccaggaccagcttgatgccttacagagggaaaagaaggatgagcag
aaggcttttcaggagaaagagcaagagctaaggactgttatcggagacctgcaggcggaa
aacacactactgtcgggaagactggagcaggagagagtggaggcactggagagggcggag
aaagagaaagaggaggcagttaaagctgctttacaagaggccttaagagactttcaaagc
cagaaagtggagactgagacaagactgttaggacaaattgaactacttgaaaatcagctc
aaagacagacaatccactgacatagtggcacctactgtagaaatgacagagactggtatg
gagaccagtgctgcattatcactggagagtgggcagtggaccgaagaaaaggcatcactt
ttggccaaactagagctcctggaacgcacaaagaacgaggaaatgcagaacctgaagacc
tcgcttattgctgagcagcagacaaacttcaataccgttctgacccgggagaaactaaag
aaagaacacatcatcaatgacctgtctgagaagctcaaaaacttgacgcagcaacaagag
aaagacaaaggcctgatcgaaacgctctcagaggaccgtgcctccatccttcaggagaag
aagcagatggaggaggaactcaaccgcctgcgaagcaccgccctcgtctcttcgtccttc
tttccacccaatcccatcccggtcatcacggaagctcacggcgcctgtggtctcgctcac
atggaagcattctcaccgtccacaactgatccagagagattggcgtccatggctgcgttc
aaggatgaggagagagtggagtcagctgtggaggccagcatgatgacagtgcacgacaac
tctatgctgtctgaagagaaacagcgcatactgattttggaaaggaccttacacatgaag
gaagaagaaaacaaaagacttagtcagagattgatgtcacagagtatgtcatccgtctca
tcacggcactcggagaaaatcgccattcgagattttcaggtgggcgacttggttctcata
atcctggacgagaggcacgataattacgttctcttcaccgttggtcccaccctttatttc
ctgcactcagagtccctcactgcactggacctcaaaccagcgacaggagcaacaagacgg
ccgtgggttttaggaaaagtcatggagaaggaatattgccaagccaaaaaggcccaaaac
cggttcaaagttcctctcggcaccaaattctacagagtaaaggccgtgccatggaacaag
aaagtgtaa
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integrated database retrieval system
