Garra rufa (doctor fish): 141301222
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Entry
141301222 CDS
T11039
Symbol
fanci
Name
(RefSeq) Fanconi anemia group I protein isoform X1
KO
K10895
fanconi anemia group I protein
Organism
grf Garra rufa (doctor fish)
Pathway
grf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
141301222 (fanci)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141301222 (fanci)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FANCD2-I complex
141301222 (fanci)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCI_S4
FANCI_HD2
FANCI_S1
FANCI_S3
FANCI_S2
FANCI_HD1
FANCI_S1-cap
CSTF2_hinge
Motif
Other DBs
NCBI-GeneID:
141301222
NCBI-ProteinID:
XP_073687571
LinkDB
All DBs
Position
25:11669117..11687695
Genome browser
AA seq
1389 aa
AA seq
DB search
MSNMKVTAEKILSLSESDGVDELQKHLTLLSDDQLTTMLTNSALKGKDTGVLIKAIFKGS
PVGVSHGANRRLLVYKHCIPLCESGDLQTEVASDIIGLLMLETHSLPGHALATLASLYVD
AIKVGEMNSGRSLELFPTILTALAATEALAYGKGELSGDEYKKQLINSLCSSRWDPQCVI
HLTTMFRDVPLSAEELQFLIEKIVRMFLKLDLQEIPPLVYQLLLLSAKGGKKLVLEGIIN
YFKKQDQLQKDEQRNAENEDVEVQTIPQDQLRHVEGTVILHIVFAIRLDHELGREFFKSL
KAAQSDPLCPFSVALLLSVARIQRYEEQVFEFLKCAITKNFKDDQIQHSSKFLQELLPQC
NSVSSMILDTVKNSVFGWDHVTQGLVQLGFILMDSFGPKAGAFGKISSTEGTSTTAKTPN
QQACRLGGQVLLESFKMHEPIRGEILEQVLNRLVTKTASPVTHFIDLLSSIVMSAPMILL
ESSSKVTETFDQLSYLPLSTVQGLLKAVQPLLKVSMSMKDALILVLRKAMFSSNLDGRKS
AVAGFLLLLKNFRILGSLASSQASQAITSSQVQADVHSRYNTAANEAFCLEILSSLRRCL
NQQADVRLMLYEGFHDVLRRNSQLTSSIMQTLLSQLKRYFEPEQDLLPPLKLESCISAHG
DQVFIQEPLAHLLSCTVHCLLWNQNMRSGGNVSDDEDDEDEEGGVQSELHAILESITKRM
IKSELEDFELDKCAEFSTSSSVGVKNSIYAVLVMGLNEVLIEYNFITANYSKNHFEDVLE
LFKHYHKVSDILKERAGKGRPASSKTPRSLLSLGFISTLLTALFRDSTQSREESLSVLRS
NGDFLRYSVSVALQKIQQLEETGHTDGPEGQSPDKTFRHLCDITSVLMWRYTNVPSTVED
AGKKEKGQSVSLLCLEGLLRVFTTVLQRYPTRMSNFLSSLGEGEAEGEGSDLTEQTAFYI
RQFQRALMNQLSGGEEEFNSKEAQLLVSILSVLSRQLNPSSQQFGQMITWTVKICKETNF
EDISLTKGLLSLLFNLHVLYKSPVTLLWEMCQDIHSQLGDIDQDVEVEKQSHFAIISIKT
AASATLLVLSQVGKVLDEVDWLIAKKKGQISSDKTISGSTQQPLGQQDAIEKAITIQLGT
LLTALHELVQTALPTGPCSDTLMRELSRTYSILTTLTKYYIQLCATQPGQLPARLEKLVK
LSGSHLTPQCYCFITYVQSGELTTGAPEKSKKKKKEDDAVAAASAKVLRQTKAIPNLIFN
IEQYEKFLILLSKKSKVNLMQYMKLSTSRDFRINAATLEAALQEQEHQQDESQQVCLYLN
MFIVLWDWVFHLDSCLFSFRLKILSRLRKLKPQRKRGGSSEEKKSLTLVLPLHFLYPHSF
IPVISTLPV
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatatgaaggtcacggcggaaaagatcctgtcattatcggaaagtgatggagta
gatgaactacaaaaacatctcaccttgctgtctgatgatcagctcacaaccatgcttact
aatagtgctctgaaagggaaggatacaggcgtcctgatcaaagccatatttaaaggttca
ccggtaggtgtttcgcatggcgctaaccgtagactgcttgtgtacaagcactgtattcca
ctttgtgaatctggagacctacaaacggaagtggcatcagatattattggacttctgatg
ttagagacacacagtctacctggtcatgcattagccacgttggcatctctgtatgtggat
gccatcaaagtaggtgagatgaatagtgggagatcgcttgaacttttcccgacaatccta
acagctcttgccgctacagaagcattggcttatgggaaaggtgagctgagtggagatgaa
tacaagaaacagctgatcaacagtctttgctctagcagatgggatccacagtgtgtaata
caccttacgaccatgttcagggatgttccattatctgctgaggagcttcagtttttgatc
gagaagattgtacggatgttcctcaagttggatctacaggagattccacctcttgtctat
cagctgctgctactgtctgccaagggcggtaagaagttggttctagagggaatcatcaat
tacttcaagaagcaagaccaacttcagaaagacgagcagagaaatgcggagaatgaagat
gtggaggtgcagaccatcccacaggatcagctgcgtcacgtagagggaacggtcatcctc
cacattgtctttgctattcgtcttgaccatgagctcggcagggagttttttaaaagcctc
aaggcagcccaaagtgatccgttatgtcccttcagcgttgctttgctgctctctgtggct
cgtatacaacggtacgaagagcaggtatttgagttcctgaagtgtgccatcactaagaac
ttcaaggatgatcagattcagcacagctctaagtttctgcaggaactgctgcctcagtgt
aacagcgtctccagcatgattttagacacagtcaaaaacagtgtgtttggctgggatcat
gtcactcaaggtctggtgcaactggggtttatacttatggactcctttgggcctaaagcc
ggagcgtttgggaagatcagttccacagaaggaacatcaaccacagctaaaacgccaaat
cagcaagcctgtcgacttggtggacaagttctccttgagagcttcaagatgcatgaacca
atcagaggcgagatcctagaacaagtcttgaaccggctggtgactaaaacggcctcacct
gttactcatttcattgaccttctttccagcatagtgatgtctgctcccatgatcctcttg
gaatcttcctctaaggtcacagaaacatttgaccagctctcctacttgcccctcagcact
gtgcagggtctcctcaaagctgtgcagcctctgctcaaagtgagcatgtctatgaaggat
gccctcatcctggtcctccggaaggccatgttctccagtaatttagatggcaggaagtca
gcagtggcaggtttcctgttgctactaaagaactttcgtattctggggagtttagcttcc
agccaggccagtcaggccattacatccagccaggtccaggcagacgtccactcgcgctat
aacactgctgctaatgaagccttctgtttggagatcctgagcagtctacgccgctgcctt
aaccagcaagctgacgtccggctcatgctttatgagggtttccatgatgtccttcgtcgt
aattctcaactgacgagttccatcatgcagacccttctatcacaattgaagcgatacttt
gaaccagagcaagatctgcttccgcctctgaagctggagtcgtgtatcagcgcccatgga
gatcaggtcttcatccaggagcctctggctcacttgctgtcctgcacggttcactgcctg
ctgtggaaccagaatatgcggtcaggtggcaatgtgagcgatgatgaagatgacgaagat
gaggaaggcggcgtacaaagtgaactgcacgctatattggaaagcataacgaagcgcatg
attaaaagtgaactggaggattttgagttggataagtgtgctgaattttcaacaagttct
agtgttggagtgaagaacagcatctacgctgtgctggtgatgggactgaatgaggttctc
attgagtataacttcatcactgccaattacagtaagaaccattttgaggacgttctggag
ctgttcaagcattatcataaggtgtcagatatcctgaaggagcgagcagggaagggtcgc
cccgcatctagcaaaacccctcgcagcctgctgtctctaggctttatctctacattgctc
actgctcttttcagagacagcactcagagccgtgaggagagcctgtctgtgttgcgttcc
aatggagacttcctgcgctactctgtgagtgtggctctccagaagatccagcagcttgag
gagacgggacacacagacgggccggagggacagagccctgataaaactttccgccacctc
tgtgacatcaccagtgtgctaatgtggcgctacaccaacgtgccgtcaaccgtggaggat
gctgggaagaaggagaaaggccagagtgtgtctttactatgtctggagggtctactgcga
gtcttcacgaccgtgctacagcgataccccacgcgcatgagcaacttcctgtcatctctc
ggggaaggagaggcagagggtgaggggtcggatctgacagagcaaacagctttctacatt
cgccagtttcagcgagcactgatgaaccagctcagtgggggagaggaggagttcaacagt
aaagaagctcagttattggtcagcatcctcagcgtactctcacgccaactcaatccttcc
tctcagcagtttgggcaaatgatcacctggactgtgaaaatttgtaaggaaaccaacttc
gaggacatctcactcactaagggcttgctgtccctgctgttcaacctgcatgtcctgtat
aaaagcccagtgactctgctctgggagatgtgccaggacatacacagccagctgggagac
atcgaccaggacgtagaggtggagaaacagtctcactttgccatcatcagcatcaaaaca
gctgcatctgctacgcttctagtcttgtctcaggttggaaaggtgttggatgaagtcgac
tggttgatcgccaagaagaaaggccagataagctcagacaaaactatttcaggaagtacc
cagcagccactgggccagcaggacgcgatcgagaaggccatcacgattcagttaggtacg
ctgttaacggctctgcacgagcttgttcagaccgccctgcccacaggaccctgctcagac
acactaatgagggagctcagtcgaacctacagcatcctgactacacttaccaaatactat
attcagctgtgtgcgactcaaccaggccagctccctgcacgtttggagaaattggtgaag
ctgtcagggtctcatcttactcctcagtgttactgtttcatcacgtatgtacagagtgga
gagctgacaacaggagcgccggaaaagtcaaagaagaagaaaaaagaagatgatgccgta
gcagccgcttcagccaaagtccttcgtcagactaaagccatcccgaacctcattttcaac
atagaacagtatgagaagttccttattcttctttccaagaaatccaaggtcaatctgatg
cagtacatgaagctgagcacttccagagacttcagaatcaatgctgccacattggaagct
gctctgcaggaacaggaacaccagcaggatgaaagccaacaggtttgtctttatttaaat
atgttcatagtgctgtgggactgggtttttcatcttgatagttgtcttttttcttttaga
ctgaagattctcagccgtctgaggaaactcaagccccaaagaaaaagaggaggaagcagt
gaggaaaaaaagagccttactcttgtccttcctttgcactttttatacccacattcattc
attcctgtcatttcaacactgcccgtttga
DBGET
integrated database retrieval system
