Garra rufa (doctor fish): 141301642
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Entry
141301642 CDS
T11039
Symbol
spg11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141301642 (spg11)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
141301642 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
141301642
NCBI-ProteinID:
XP_073687940
LinkDB
All DBs
Position
25:complement(4321509..4403200)
Genome browser
AA seq
2388 aa
AA seq
DB search
MLKALSRSDVRAERVLEVDLLPERDVCGGVEDAVAVKLSKGPSVLCCVNAAGAVSIRNIS
ESRGALNTLQHTCTDFLWEDQSESSGEDVKLKLLLLDCQCALRLYEIDPRDQALLLCERS
SDSLLQCVQHKHPSVSELLSVRPLSFADGRCVLLLNSCVLLQLRWTEETSQMETLSCVQL
ALPVQTEDECADCRLCRGALFILLSTGLTYVFDSTDGQLLATVDFPSYCGPEHTDADVSP
SVTSFCLFQISQDLSTAVSVTRQNQALAVDLDHYFRKYPDHLHCHSAPNRPFLKPTESWD
QDSLASSVHSLSVLEKPFQTDRSWEARLSSLYSRSKTPVRSAQRLPWYKDFPHVECRRAA
ATAKLSQPSVKPGGAVTCFHVSDGATAAGLNVSEFSALVTFVCPGNANTVLAYWDLEGQS
VTYHRADAPAVPVQRSAEEHLCLLLKASSLSVVLFCVTQEELLNRLMVFGTAGTVDSLCH
LNDWGRCSIPIHALQAGLKNHQLDTVDFFLKSKENILSPASGFVLPDQTASASTQSHLRN
IQALCPALDLLRSAIRDTHTEAQSQQFCDQLLSITLTFLNTQTKVLLTGAQELDANLQEC
VQILDGYISDLRRYMKKFPWPDGGGSQASVGLNAPASIADTDQEWQSLSDEEVVQHAVLS
RRILHAQAFLRRRGCVECSLEDIRKTGLRLAFTCLTHKDLQQAKTLLTNMGFNVKEQLHS
ICVFTADRDLRAFMVEELQKQNFLSGEELQQVEFIQTIENLCSTPATRSSNRLDANRVLQ
MSRSDPESRRLLQEITQEVDSSSCRSLLDPVCLDWVRYWDRDTQNSILLSRLQQTAQGSW
DAAVLWSYLTSLHDCVRASEWVCSSTAAEGQSTAAPRWPALAPHVINDSSRCGQYLRDRI
LVLLARQGLFVQSEMEDFEKLLWRLGQARGVMQHGKDPPVPQFQASQGQEFHQRFVLHCL
ENSLRYLLYSYLEHYRLTPGNCPVLTDRNLFESFPWFEMMLKLQKITRDLKDPERVFEAS
LTAAQVLLPGSQASISSMLLEGHSLLALSTIMFRPGGIDQAVREGERGQDPLSRVDPQLL
RMALSAYPKLRTALFPQSGPRCDISLYHLMQSLHPLDPSKLFGWQSANAVGSSEASSEPP
HFSSSQLVSKFAVIENLDFLYYLSHGRPAFAYGVFLTQHLVNCSNVKLQVSLAVDQAYSL
GLLNFSSACVSAACVCFCELLGVCSLKLRVDLRALNLILRLWTQTCEDHRDAASLRQALV
EKATKLVSGEKQSAQELLVHLETAVRDVLEKKAISRSSYEAAQEWALPVQFCHLHALPLS
PAYPQDCARDGQWLNFLLFVQLHNYPLQQVRSLAASFSPALQTHISLAFQDLHPTSSHQA
LEDQGVIRSALPRDESPEPPRELFQVLLESQEKPSPWRFLLSEAVRQRSPALSVLAACHQ
GAELLQCLCVWILTSVGDDVTEEATAHIHESPAHHVWNLHDLSVLWKTLLCRSKIRPLIR
GFQLFQRESPLIYMLHMYEFCSDYKDYQRAKDKLLDFQKCLLNLRSSSVVLSSDVLPVQW
VEAQASVLLLTLLKQSRTQYELRRLLQLLVDMERLLKSNGPDFKKLSQLSQVLSDTPVPL
SAHLLDDYSSAGLQDECRRIMQELQEISLFTQARKVAQLAELPIDCLIINELQRDLVAHK
QKRQWERQETRLAFWRRCHEQLETDRVQPEAASHYFLSQAEEPLESDSELVHLQERCLLL
GLAGHWLSHREPPPPVPRLSELEKRQWQSRIRWLVLHTALERESLFAPSALSEDSFQNLL
KEFSFSRMAALDDPVHLSLDGLPAAEDDCVLSGEERKALAALVCQLLDEGGVNEASRVCR
YFGLFHKDVWLVLKCRGLASGELQLELHSPDGETRRSLPSSPSMSSLSSFVVVPSPDDQV
LVQLKQLVDQCCNGKSYCKQVLSLYELSKELQCSYAQISSEEPEAVLKKVLLSQQSDRYK
RAQAFISVQGLQPDAVARLISTAVLEGLLASSQEGDTGERLMYGPADGRETFLQLAKLCG
DPNLVGTELLDSIPTVPLSELSCTVEILILAHDCFSLTCNMEGIVRVLQVARHLSHTHLA
HGDGYGLLVRLLTGIGRYNEMTYIFDLLHQNHRFEMLLRKKVESNVQLKTALLDYIKRCL
PGDSEKHNMVALCFSMRREIGENHEAAARTQLKIIESQPWAITPDLKKALVKVLTLLKDA
AESYSKDSCVRQAVKCVKLAKLVTLQLHFLNHGQEQRVINLPPAELHSTIVSLPRCYQVF
VLAEAYDYSPDWAELLYQKVILRGEFVYLEEFKRHRALSAGLFEDISKKMSHHKAPASSS
QNLKKLLSYCEDVYTHYKLAYEHKFLDVANMLLQDSKTNSYLNDRLGT
NT seq
7167 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaggcgttgagcaggtcagatgttcgagctgagagagtgctggaggtggatctg
ctgccggagagggatgtttgtggaggtgtggaggacgcagtggcggtgaagttgagtaaa
gggccgtcagtgctgtgctgtgtgaatgcagcaggtgcagtgagcatcaggaacatctct
gagagcagaggagccctcaacacactccagcacacctgcactgattttctgtgggaggat
cagtcagagtcgagcggtgaggatgtgaagctgaagctgctgctgctggactgtcagtgt
gcgctgagactgtatgagattgatcctcgtgatcaggcgcttctgctgtgtgagagatcg
tcagattcactcctgcagtgtgttcaacacaaacatcccagtgtgtcggagctgctgtcg
gtgaggccgctgtcgttcgctgacggccgctgtgtgctgctgctgaactcttgtgtgctg
ctgcagctcaggtggacagaagaaacgtctcagatggagacactgtcctgcgttcaactc
gctttacctgttcagacggaggacgagtgtgccgactgtcggctctgtcgaggagcgctc
ttcattctgctcagtaccggactcacatatgtgtttgacagcactgatgggcaactcttg
gctacggtggattttccgtcatactgcggtccagagcacacagacgctgatgtttctcca
tccgtcacgtccttctgtctcttccagatctcacaggatctcagtacggctgtgagcgtc
acccggcaaaaccaagccctcgctgttgacctcgaccactatttcaggaagtatccagat
caccttcattgccattcagcccctaatcggccatttctcaaacccactgaatcatgggat
caggacagtctcgccagctccgtccacagtctgtcagtactggagaaacctttccaaaca
gacaggtcgtgggaggcgcgtctgtcttcactgtatagtcgatctaaaactccagttcgc
tctgctcaaaggttaccctggtacaaagatttccctcatgtggagtgccgtcgggcggct
gccactgccaaactctcccagccctccgtgaagccagggggcgctgtgacgtgtttccat
gtgtctgatggagcgacagcagcagggctgaacgtatccgagttttctgcgctcgttacg
ttcgtttgtcctggaaacgcaaacacggttctggcctactgggatctggagggtcaaagc
gtgacgtaccaccgtgcagacgctcctgccgtccccgtccagagatcggctgaggagcac
ctctgtctgttgctgaaggcatcaagtctgtcggtggttttgttctgcgtgacgcaggag
gagctgttgaaccggctgatggtttttggcacggccggtacggtcgactctctctgccat
ctgaacgactggggacgatgttcaatacccatacatgccctacaggccggcctgaagaac
catcagctggatacggttgatttctttctgaagagtaaggagaacatcctgagccccgcg
tctgggttcgttctgcccgatcaaacggcgtccgcctcgacccaaagccatctgaggaat
attcaggctctgtgtccggctctggatctgctgcggtctgcaatacgcgacacacacact
gaagctcagagtcaacagttctgcgatcagctgctgagcatcacgctaaccttcctcaac
acgcaaaccaaagtcctcctcaccggcgctcaagagctggatgcgaacctgcaggagtgt
gttcagattttagacggctacatctctgatctgcgccgatacatgaagaagttcccttgg
ccggatggaggcggctctcaggcctccgtgggtctgaatgctcctgcgtccatcgcagac
actgatcaggagtggcagtcgctgtctgatgaggaagtcgttcagcacgctgtattaagc
agacggatcctacatgcacaggctttcctgcgcagacgtggctgtgttgaatgcagtctg
gaagacatcaggaagacgggactgagactcgctttcacctgtctcactcacaaagacctg
cagcaggccaaaacactgctgactaacatgggctttaatgtaaaggagcagctccacagc
atctgcgttttcactgccgatcgggatctaagggccttcatggttgaggagctgcagaag
cagaatttcctttcaggtgaagagttacagcaggtggagttcattcagaccattgagaac
ttgtgctccacgcctgcgacgagatcctcaaaccgcctggacgccaacagggttcttcag
atgagccggtccgatcccgagagcagacgactgctgcaggagatcacacaggaagtggac
tcgtcctcctgcaggtctttactggatcctgtgtgtttggactgggtcagatactgggac
agagacacccagaactccatccttctgtccagactgcagcagaccgctcagggttcgtgg
gatgccgctgtgttgtggtcgtatctcacctctctgcacgattgtgttcgagcctcggag
tgggtttgcagctcaaccgcggctgaaggacagagcaccgctgccccccgctggcctgcg
ctcgcaccgcacgtcatcaacgacagcagccgctgcggacaatacctgcgtgatcggatc
ctagtcctgctcgcccgacagggtctgttcgtccagtcggagatggaggactttgagaag
ttgctctggaggctgggtcaagccagaggagtgatgcagcatgggaaggatcctcccgtc
ccgcagtttcaggcgtcgcagggccaggagtttcaccagcgcttcgtcctgcactgtctg
gagaacagcctgcgctacctgctctactcctacctggagcactacaggttaactcccggg
aattgccctgttctgaccgacaggaacctgtttgagagtttcccctggtttgagatgatg
ctgaaattacagaaaatcaccagagaccttaaagacccagagcgggtgtttgaggccagt
ctgacggcggcgcaggttcttctccccggcagtcaggcgagcatcagcagcatgttgctg
gagggtcacagtctgcttgccctgtccaccatcatgttcagaccgggcggcatcgaccag
gcggtgcgagagggtgagcgcggtcaggaccctctgagcagagtcgaccctcagctgctg
cgaatggccctgagcgcgtatcccaaactcagaacggccctgttccctcagagcggccca
cgctgcgatatttctctctaccacctcatgcagtctttgcatccattggatccctccaaa
ctgttcggatggcagtcggccaacgccgtgggcagcagcgaagcgtccagcgagccgccg
catttctccagctctcagcttgtcagtaagttcgccgtcatcgagaatctggacttcctg
tattacctgagtcacggcaggccggcgttcgcatacggggtttttctcacgcagcatctc
gtcaactgcagcaacgtcaagctacaggtgtctctggctgtggatcaggcgtactcctta
ggcctgttgaacttcagcagtgcgtgtgtgtcagcagcttgtgtgtgtttctgtgagctg
ctgggtgtttgcagcctcaaactaagagtggatctccgcgccctcaacctcatcctcaga
ctctggactcagacctgtgaggaccacagagatgcagcttcactccggcaggccctcgtg
gaaaaggccactaagttggtcagcggtgagaaacaaagcgctcaggagctgctggttcat
ctggagacggccgtcagagacgttctggagaagaaagccatcagtcgctcgtcgtacgag
gcggcacaggagtgggcacttcctgtccagttctgtcacctgcacgcccttcctctaagc
cccgcctacccacaggactgcgctcgtgacggacagtggctcaacttcctgttgtttgta
cagctgcacaattacccgctccaacaggtcagatctctggcagccagtttcagtccagct
ctgcagacccacatttccctggcattccaagatcttcatccaacaagctcccatcaggct
ctggaggatcagggggtcatcagaagcgctcttccccgagacgagagccccgaacccccc
agagagctcttccaggtgctgcttgagagccaggagaagcccagtccctggaggtttctg
ctgtccgaagcggtccgtcagcgcagtcctgctctgtccgtgctggcggcctgtcatcag
ggggcggagctgcttcagtgtctctgcgtgtggatcctgacgtctgtcggtgatgatgtc
actgaggaagccaccgcccacatccacgagagccccgcccatcacgtgtggaacctccac
gatctctccgtcttgtggaagacactcctgtgcaggagcaagatcaggcctctgattcgt
ggattccagctgtttcagagggagtctccgctgatttacatgctgcacatgtatgagttc
tgctcggactacaaagactatcagcgagccaaagacaaactgctggacttccagaagtgt
ttgctcaatttgcggagcagcagtgtggtgttgagttcagacgtgctgccggtccagtgg
gtcgaggctcaggcttcggttctgctgctgacgctcctgaaacagagcaggactcaatat
gagctgcgccgtctgcttcagctgctggtggacatggagagactgctcaaatccaacggt
cctgactttaagaagctgagtcagttgagtcaggtgttgtcggacactcctgtgccgctg
tctgcgcatctgctggacgattattccagcgccggcctgcaggacgagtgcaggaggatc
atgcaggagctgcaggagatcagccttttcacgcaggccaggaaagtggctcagctggcc
gagctgcccatcgactgcctgatcataaatgagctccagcgagatctggtagctcataag
cagaagcgtcagtgggagagacaggagacgcggctggccttttggaggagatgccatgag
cagctggagacggatcgcgtccagcccgaggcggccagtcactacttcctgtctcaggcc
gaggagccgttggagtccgattcagagctggttcatctgcaggagcgctgtctgttgttg
ggtctggcgggtcactggctgtcccatcgtgagcctcctccgcccgtcccgcgtctgtcc
gaattagagaagcgtcagtggcagagtcgcatccgctggctggtgctgcacacggctctg
gagcgcgagagtctcttcgccccctcggccctctccgaagactccttccaaaacctcctc
aaggagttttccttctccagaatggccgctctggacgaccctgtgcatttgagtctggac
gggctcccggcggcagaagacgactgcgtgctgtcaggagaggagcgcaaggctttggcc
gctctagtttgtcagctgctggacgagggcggtgtgaacgaagcgagccgcgtgtgccga
tatttcggtctgtttcacaaagacgtgtggctggttctgaagtgccgtggtttggcgagc
ggagagctgcagctggaacttcacagtcctgatggagaaaccagacgcagtttaccatca
tctcccagcatgagcagcctgtcgtcattcgtggtggtgccgtctccggacgatcaggtc
ctggttcagctcaagcagcttgtggatcagtgctgcaacggcaagagttactgcaaacaa
gtgctgagtctgtatgagctctccaaggagctgcagtgctcttacgctcagatctcgtcg
gaggagcccgaggcggttctgaagaaggttctgctctcgcagcagtcggaccgctacaaa
cgcgctcaggccttcatcagcgttcagggtctgcagcccgacgccgtcgctcgcctcatc
tccaccgctgtgctggagggtttgctcgcctcgtctcaggagggagacaccggagagcgt
ctgatgtacggtccggccgacgggagagagacgttcctccagctggccaaactgtgtgga
gacccaaacctggtgggaaccgaactgctggacagcatcccgaccgtcccgctgtcagag
ctcagctgcactgtggagatcttgattttggctcacgactgcttcagtctcacctgtaac
atggagggaatcgtgagggtcctgcaggtggccagacacctgagtcacacacacctggct
cacggagacggttacggactcctggtgcgtctcctcacgggcatcggcaggtacaatgaa
atgacctacatctttgacctgctccatcagaaccatcgcttcgagatgctgctgaggaag
aaagtcgagtcgaacgtccagctgaagacggctctgttggactacatcaagcgttgtctg
cctggcgacagcgagaagcacaacatggtggctctgtgtttcagcatgcgccgagagatc
ggagaaaaccacgaggcagcggcgcgaacgcagctcaaaatcatcgagtctcagccctgg
gcgatcacgccagatctgaaaaaagctctagtgaaggtcctgactttactgaaagacgcc
gctgagagctattcgaaggactcttgtgtgcgtcaggctgtgaaatgtgtcaaactggcc
aaactggtgacccttcagctgcacttcctgaatcacggacaggagcagcgcgtcatcaac
ctgccgccggcggagctgcacagcaccatcgtgtctttaccgcgctgttaccaggtcttt
gtgttggccgaagcgtacgactacagtccggactgggccgagctcctctatcagaaggtg
attctccgaggagagttcgtctacctggaggagttcaagcggcacagagcgctcagcgcc
ggtctgttcgaggacatctccaagaaaatgagtcatcacaaagcgccggcgagctccagt
cagaatctgaagaagcttctgtcctactgcgaggacgtttacacgcattacaaactggct
tacgaacacaagttcctggacgtggccaacatgctgctgcaggactccaagaccaacagc
tacctgaacgaccggctgggcacctga
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integrated database retrieval system
