Garra rufa (doctor fish): 141301896
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Entry
141301896 CDS
T11039
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
141301896 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141301896 (rag1)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141301896 (rag1)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141301896 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
zf-RING_10
zf-C3HC4_3
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
Zn_ribbon_6
U-box
Motif
Other DBs
NCBI-GeneID:
141301896
NCBI-ProteinID:
XP_073688190
LinkDB
All DBs
Position
25:12060399..12066239
Genome browser
AA seq
1064 aa
AA seq
DB search
MEKGRWSSEEAPRASMPDELSHPKFSEWKFKLFRVRSMEKAPLPNETPVEKENQEPEVAW
EMAGSPGSVMKLCFGGKSKENMESARDRVDLKLQEIDMHMNLLKSLCRLCGLSIRKAKGP
SHQVQGDLEESSRCALRRMGCKLLTWPEVILKVFKVDVTTDMETVHPSLFCHRCWTAAMR
GGGFCSFTRTQISDWKPHTSSCNLCFPKKSSFQRIGRKRAKPLKSAHGLPKRIKRDSSES
SGANRGWKPTTENSAGSGGKEWLKLSVQRGQWVKNITQCQRDHLSTKLIPPEVPADFLQA
VTCQVCDHLLSDPVQSPCRHLFCRVCILRYSRALGPNCPTCNQHLNPSHLTRPAKFFLAT
LNSLPLLCPREECSDWVRLDSFREHCLNHYLEKESQEQTNSLEQNIDGYLPVNKGGRPRQ
HLLSLTRRAQKHRLRDLKNQVKAFAEKEEGGDVKSVCLTLFLLALRAGNEHKQADELEAM
MQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKELLPGF
HQFEWQPALKNVSSSWNVGIIDGLSGWTTSVDDVPADTISRRFRYDVALVSALKDLEEDI
MEGLRERELEDSMCTSGFTVVVKESCDGMGDVSEKHGCGPAVPEKAVRFSFTIMSISIRV
EGEDDGITIFQEQKPNSELSCRPLCLTFVDESDHETLTGILGPVVAERKAMTESRLILSV
GGLLRSFRFFFRGTGYDEKMVREMEGLEASGSTYVCTLCDSTRAEASQNMVLHSITRSHD
ENLERYEIWRTNPFSESADELRDRVKGVSAKPFLETQPTLDALHCDIGNATEFYKIFQDE
IGEVYKRSNPSREERRRWRSTLDKQLRKKLKLKPVMRMNGNYARRLMTRESVDVVCELVP
SEERREALQKLMDLYLQMKPVWRSTCPSRDCPDQLCQYSYNSQQFADLLSSTFKYRYDGK
ITNYLHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRRFRKMNARQSKTFELEDVLKHH
WLYTSKYLQKFMEAHKNSAKAMQATFNPEETQDEVDVALEVPEF
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagggaggtggagttctgaagaggctcccagagcctccatgcctgatgaactg
tctcatcccaagttttcggaatggaagtttaagctctttcgggtcaggtccatggagaag
gcccctctgcctaacgaaacaccggtggagaaggaaaaccaagagcctgaggtagcttgg
gagatggcaggctctccaggcagtgttatgaagctctgtttcggagggaagagtaaggaa
aacatggagagtgctcgagacagagtggaccttaaactacaagaaattgatatgcatatg
aatcttctcaaatccctatgtcgcctttgtggcctttcgatacggaaggctaaaggtccg
tcgcatcaagtccaaggtgacttggaagagtctagccgatgtgccttgcgaaggatgggc
tgcaagttgctgacctggcccgaggtgatcttgaaggtcttcaaggtggatgtgacaacc
gacatggagacggtgcatccgtctttgttttgtcacagatgctggaccgctgccatgagg
ggaggaggtttctgttctttcacaaggacccagatctctgactggaagccccacacctct
agctgcaacctttgctttcctaagaagagctcgtttcagcgaataggaaggaagcgagcg
aaaccacttaaaagtgcacacggccttccaaagagaatcaaaagggactcctctgagtcc
tcgggggccaacagaggttggaaaccaaccacagagaattctgcaggatcaggtgggaaa
gaatggctaaaactatcagttcaaagaggacagtgggtaaagaatatcacacagtgccag
agggaccatctgagcaccaagctcatcccccctgaggtcccggcggactttctacaggcc
gttacttgccaagtgtgtgatcacctgctttctgaccctgtccagtcaccgtgtagacac
ttgttctgtcgggtctgcatcctaaggtacagccgtgctttgggcccaaactgtcccacc
tgtaaccaacatctaaatccatcccacctgaccaggccagctaaattcttccttgccacc
ctcaactctctcccactgctttgccccagagaagaatgcagcgactgggtccgactagac
tcctttagagagcactgcctcaaccactatcttgaaaaagagtctcaagagcaaacaaat
tctttagagcagaatatcgatggttacttgccggtcaacaaaggtgggcgtcctcgacag
cacctgttatcgctgacccgtcgagctcaaaagcaccgactgagagacttgaagaaccag
gtgaaggcgtttgctgaaaaggaagaaggaggggatgtgaagtcagtctgtttgacactc
ttccttctggcgttgagagctgggaatgaacacaaacaggcagatgaactggaagctatg
atgcaaggccggggatttgggctgcatcctgcagtgtgcttggctataagggtaaacacc
ttcctcagctgcagtcagtaccacaagatgtaccgcaccgtaaaggccactagtggccgc
cagatattccagcccctgcacactctacgcaatgctgagaaagagcttctccccggattc
caccaattcgaatggcagccagctttgaaaaacgtttccagctcctggaatgtgggaatc
attgacggcctctctggttggacaacctctgtcgacgacgtccccgcagacaccatctct
agaagattccgttacgacgtggcactggtttctgcattaaaagatttggaagaggacata
atggaaggactaagagagagggagctggaggacagcatgtgcacttctggtttcaccgtt
gtggtgaaagaatcatgtgatggtatgggagatgtcagtgagaagcatggatgcggtcca
gcggttcctgaaaaggcagtgaggttttccttcacaatcatgtccatttccatccgagtt
gaaggtgaggatgatggcatcactatttttcaagaacaaaagccaaactctgagctgtcc
tgcagacctttgtgcctcacgtttgtggacgagtccgaccacgagactttgactggcatc
ttgggacctgtggttgcagagcgtaaagccatgacggaaagtcgccttattttatctgtc
ggtggcctgctacgatccttcaggttcttcttccgaggcaccggctatgatgagaagatg
gttcgtgaaatggaaggccttgaagcttcaggttctacttatgtatgcaccctctgcgac
tcaacccgagctgaagcgtctcaaaacatggtgctacattccatcacgcgcagccatgat
gaaaatcttgagcgctatgagatctggaggacaaatccgttctcggaatctgctgatgaa
cttcgtgaccgggtcaaaggtgtttccgccaaacctttcttagagacccagcctactcta
gacgccctgcactgtgacatcggcaatgctactgaattctacaagatctttcaggatgag
attggcgaggtctacaagaggagcaatccgagtcgagaggaacgccgccgttggaggtca
accttggacaagcagctgagaaagaagctgaaactcaagcctgtgatgaggatgaatgga
aactatgctcgtcggctaatgacacgcgaatctgtggatgtggtctgtgagttggttcct
tccgaggaacgccgtgaggcactgcaaaaactgatggacctctacctccagatgaagcct
gtttggcgttccacctgtccctctcgagactgtcctgaccagctctgtcaatacagctac
aactctcagcaatttgctgatctcctttccagcacgtttaagtaccgctatgatggaaaa
atcaccaactacctccacaagactctggcccatgttcctgaaatcattgagagagatggg
tccattggagcatgggccagtgaaggcaatgagtctgggaacaagctgttcagacgtttt
cggaaaatgaatgcaaggcagtccaaaacgtttgaacttgaagatgtactgaaacatcac
tggctgtacacctccaagtaccttcagaagttcatggaggctcacaagaattcagccaaa
gcaatgcaagccacattcaacccagaagagacccaggatgaagttgatgtagctcttgag
gttccagagttttaa
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