Garra rufa (doctor fish): 141316020
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Entry
141316020 CDS
T11039
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 3-like
KO
K12880
THO complex subunit 3
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141316020
09122 Translation
03013 Nucleocytoplasmic transport
141316020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141316020
03041 Spliceosome [BR:
grf03041
]
141316020
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
141316020
Spliceosome [BR:
grf03041
]
Complex C
Other components
EJC/TREX
141316020
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141316020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
EIF3I
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
eIF2A
Beta-prop_Vps41
Beta-prop_WDR36-Utp21_1st
DSE1_N
WD40_RFWD3
Beta-prop_NOL10_N
RMC1_N
Beta-prop_WDR35_TULP_N
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_HPS5
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Tricorn_2nd
Beta-prop_ACSF4
TRM82_WD
PD40
PAC11
Beta-prop_NUP159_NUP214
B-prop_COPA_B_2nd
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_EIPR1
Peptidase_S9_N
ASA1
Beta-prop_NWD2_C
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
Beta-prop_ELP1_1st
Cytochrom_D1
WD_LRWD1
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
141316020
NCBI-ProteinID:
XP_073688864
LinkDB
All DBs
Position
Unknown
AA seq
334 aa
AA seq
DB search
MQLKYTAKEQXSMASSYYQEMQEVFRNNNKSREFPAHSAKVHSVAWSCDGKRLASGSFDK
TASVFVLEKDRLVKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMAT
VSTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMF
FLTNGNGCINILSYPDLKLIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWNVEELV
CVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEIQCESPTFTVAWHP
KRPLLAYACDDKEGKYDSNREAGTVKLFGLPNDS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttaaatacacggcgaaggagcagncaagcatggcgtcctcatactatcaggag
atgcaggaggtttttaggaataacaataaaagcagagagttcccggctcacagtgctaaa
gtgcattcggtagcctggagctgcgatggaaaacgactggcatccggatcctttgacaaa
accgccagcgtgttcgtcctggaaaaagaccgactggtgaaggaaaacaactaccgaggg
catggagacagtgtggatcagctgtgctggcatcccaccaaccctgatctgtttgtcacc
gcatcaggagacaagaccatccgcatctgggacgtacggaccaccaaatgcatggccacg
gtcagcaccaaaggggagaacatcaacatctgttggagtcctgatggtcagaccattgct
gtaggcaacaaggatgatgttgtgacttttattgatgccaagacgcaccgtccccgggcc
gaggagcagtttaagttcgaggtcaatgagatctcctggaataatgataacgacatgttt
ttcctgacaaacggaaatggctgtattaatatattaagttatcctgatctcaagctcata
cagtcaattaatgctcatccatccaactgcatctgcattaaatttgatcccacgggcaag
tattttgccacaggaagtgcagatgcgctggtcagcctgtggaacgtggaggagctggtg
tgtgtgcgctgcttttccagactagactggcctgtgcggacacttagtttcagtcacgat
ggtaaaatgctggcgtcagcctccgaggatcatttcatcgacattgctgaagttgaaaca
ggtgagaagctctgggagattcagtgtgagtctccaaccttcactgtagcgtggcatcca
aagagaccgctgctagcgtacgcctgcgacgataaagagggcaaatacgacagcaaccga
gaggcagggaccgtcaagctttttggacttcctaatgactcctga
DBGET
integrated database retrieval system
