Garra rufa (doctor fish): 141318094
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Entry
141318094 CDS
T11039
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141318094 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141318094 (cpsf4)
03019 Messenger RNA biogenesis [BR:
grf03019
]
141318094 (cpsf4)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141318094 (cpsf4)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141318094 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_12
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
141318094
NCBI-ProteinID:
XP_073689282
LinkDB
All DBs
Position
1:complement(32505462..32509553)
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AA seq
269 aa
AA seq
DB search
MQELIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRAACMKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGATEQPP
LPQQAQSQQKQQNPQPINRSSQSLIQLTNTNINNNQRMPNAVGIVHSNNNMGGPRGPRPL
DQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattaatcgcgaatgtcgatcatctcaagtttgatctcgaaattgctgtagaa
caacaattaggcgctcagccactgccatttccaggaatggataaatctggcgcagctgtt
tgcgagttcttcatgagagctgcctgtatgaaaggtggaatgtgtcctttcagacacatc
agtggagaaaagactgtggtgtgcaagcactggcttagaggtttatgcaaaaaaggagac
caatgtgaatttttacacgagtatgatatgacaaagatgcctgaatgttatttctactct
aaatttggggagtgcagtaataaagagtgtccatttttgcacattgacccagaatctaag
attaaagattgcccatggtatgatagagggttttgtaagcatggtccagattgcaggcac
agacacacaagaagagttatctgtgtaaactaccttgttggtttctgcccggagggcaag
tcgtgcaaatttatgcacccaagatttgaactccctatgggtgcgactgaacagccacca
ttaccacaacaggcacagtctcagcaaaagcagcaaaacccgcagcccataaacaggtca
tcacagtcgctcatccagttaaccaacaccaatattaacaacaaccagagaatgccaaat
gctgttgggatagtgcactctaacaacaacatgggtggacctcgcggtcctcgtccactg
gatcaagttacgtgttacaagtgtggtgagaagggccattacgcaaacaaatgtacaaaa
ggacacctggcgtttttgagtggacagtaa
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