Garra rufa (doctor fish): 141318870
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Entry
141318870 CDS
T11039
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
grf01001
]
141318870 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
grf04054
]
141318870 (ciita)
Enzymes [BR:
grf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
141318870 (ciita)
Protein kinases [BR:
grf01001
]
Serine/threonine kinases: Other
TAF1 family
141318870 (ciita)
Pattern recognition receptors [BR:
grf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
141318870 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
nSTAND3
AAA_25
Pox_A32
NB-ARC
VapE-like_dom
TsaE
AAA
Roc
LRR_8
AAA_24
AAA_14
ABC_tran
Motif
Other DBs
NCBI-GeneID:
141318870
NCBI-ProteinID:
XP_073689321
LinkDB
All DBs
Position
1:44458912..44471037
Genome browser
AA seq
1045 aa
AA seq
DB search
MEPRCETDAESQDVVQDPMSELLPDNVLLEYISSLESFEEEFDPNIFDKFPVDADTTCTP
LPESVFFPDEVKNKKRKVADPDKPRRPKRKRAAPPYPESPSNVRLPTITPESSFHLSSNQ
FQHVLHFPFSPLTLPPSGGSPLQIIQTISPLTPPLIGTMVPTGPTYVIVSPQCVSPGTQI
IPLSPADGTVAPSELTGSMLPVGSSSDSAWQGLPPVSVDTPSPTKEGNPQKKDRNIRPEA
PECVKDYIHQIKSHMRDVCCSMREGMEMESHYVDMHLVQRKLLIKSGKNANKCLEKELVV
LSDSERKKAKLNRSQLFHNSDSKPKQSVALLGKAGVGKTTFIQRLCLDWASDSLPQFQFV
FLLNCKILDLTQSNYSLKALLFDLSMSPRCEDSDSVFKHILSCPEEVLIIFDSFDHIKDF
EGLLQAPAKSHTNTKYTIKQLFSGLFQKEIFSGCTLLIATRPKDVLNQVLRKMDSLLELC
GFSPEDIELYTSKYFEDASLQENALKQIRNHRYISSLCSNPLLCWTTCFLLEQQDVSSND
DLPSTLTDLYQRVTSKHLQEASFGNKNSKQLDIPQLCKIAWEGFKNHDTCVNPVSSTELL
DCGLKSGILTSYKTSERQENHFADLFTQNLLSAVHLVQSKQVNEKMVVANSVVHQKKRKV
QGESQDVLQRFVTGLIFQKPPDGVSILDSSVNIKAKKKAVETHLESMKPNDLVPARLLEL
FHCVYETCSAKFAKLLLKNLPDNLSFYGTQLCPSDVYVICHLLQHASSLKRTFSINLQDT
CIPISGLKELVGLKCIKSFWAHTADTIGLWEELHQSNDELNLKSAIEKFTLHPLKATQGY
HIESLPVLVQIHREKKLPMSEFVSALDEGVPALRHLQRLEFELGVQNGPELFPKLIEVLP
SLQSLQHLDLEKNQIGDSGAEKLAGVVHFLECLKLLNLSQNHIGDAGVEKLAKALPSVPS
LQSLSLYGNAIADSGAENLALVLPDMNFLQDLDVKFNKFTDIGATKLSAALKNCTGMKSL
ELWNDCIPYGVFEHLRLQDSRIRSL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggaacctcgctgtgaaacagatgctgaatcgcaagatgttgtccaagatccaatgtct
gaacttttacctgacaacgttctcttagaatatatctcgtcacttgagtcttttgaagaa
gaattcgatcccaacatcttcgataaatttccagttgatgcagacacaacctgcactcca
ctaccagaaagtgtttttttcccagatgaagtgaaaaacaaaaagcgaaaagtagctgat
ccagacaaacccagaaggccgaaacgcaaacgggcagcaccaccatacccagaaagtccc
tcaaacgtaagattgcccaccattacccctgagagtagtttccatctaagctcaaaccaa
ttccagcatgtactgcactttcccttcagcccccttactctgccccctagtggtggttca
cctctacaaatcatccagacgatcagccctcttacgccgcctctaattggcactatggtt
ccaacagggcctacatatgtaattgtgtcaccccagtgtgtgagtccaggcactcagata
attcctctttcacctgccgatggcacagtcgccccgtcagagctcactggttccatgctt
ccagttggctcatcctcagacagcgcatggcagggtttgccaccagtatctgtcgacact
ccctcccctacaaaagaaggaaacccacaaaaaaaagacaggaacatccgcccagaagca
ccggaatgcgttaaggactacattcatcaaataaaatcccacatgagagatgtctgctgc
tctatgcgtgagggaatggaaatggagtcacactatgtggacatgcatctggttcaaagg
aaactccttatcaaatctggcaagaatgcaaacaagtgtctggagaaggaactggttgtc
cttagtgattcagagcgaaagaaagcgaagctgaacagaagtcagttgtttcataacagt
gattccaaaccaaaacagtcagtggctctccttggaaaagccggagtggggaaaaccacg
ttcattcagcgcttatgtttggactgggcgagcgacagcctgcctcaatttcagtttgtt
tttttgttgaactgtaaaatcttagacctcacacaatctaactacagcttgaaagcctta
ctgttcgatttgtcaatgtctcctcgctgcgaggactcagactccgtgttcaaacacatt
ctgtcctgtcctgaagaagttctcattatctttgacagctttgatcacattaaagacttt
gaggggcttctccaggcccctgctaaatcacacacaaacactaaatacaccatcaaacag
ctattttcaggtttgttccaaaaggaaatcttctcaggctgcacgcttctcatcgccaca
aggcctaaagacgttttaaatcaggtgctgcgaaaaatggacagccttttggagctttgt
ggattctctcctgaggacattgagttgtatacgtcaaaatatttcgaagatgcttccctc
caagaaaatgcactaaaacagattaggaatcacagatacatttccagtttatgctctaac
cctctgctttgctggactacctgcttcctgctcgagcagcaagacgtaagcagcaatgat
gatttgccatcaaccctcacggacttgtaccaaagagtgacctccaagcatctgcaagag
gctagctttggaaataaaaatagcaaacagctggacatcccacaactatgcaaaattgca
tgggagggattcaagaatcacgatacatgtgtaaaccctgtcagttctacagagctgctg
gactgtggtcttaaaagtggcatacttacgtcgtacaaaacgtctgagcgtcaggaaaac
cactttgcagaccttttcactcagaacctcctgagtgctgtgcacctggtacagtcgaaa
caggtgaacgaaaaaatggtggtggcaaacagcgtagtccatcagaagaaacgaaaggtt
cagggagagtctcaggacgtgcttcagaggtttgtcacgggcttgatcttccagaagcct
cctgatggagtcagcattctcgacagcagcgtcaacataaaagccaaaaaaaaggctgtc
gaaactcatctggagagcatgaagcctaatgatttggttcctgccaggttgctagaactt
tttcattgtgtgtatgagacctgcagcgccaaatttgccaaactgctgttaaagaacctg
cctgacaatctgtcgttctatggaacgcagctttgcccgtcggatgtgtacgttatatgc
catcttctccaacatgccagcagtttgaagcggaccttctccatcaacctgcaagataca
tgcattcccatcagtggcctgaaagagcttgtgggactcaaatgtatcaaatcattctgg
gcgcatacagcagacaccattggcttatgggaagagttgcatcaaagcaatgatgaactg
aacttgaaaagtgccattgagaaattcaccttgcacccactcaaggcaacacaagggtat
cacatagaaagcctgcctgtcctcgtccaaattcacagagagaagaagctaccaatgagt
gaatttgtgtctgcactggatgaaggtgtaccagccctccggcatcttcagagactggaa
tttgagcttggagtgcagaatggtcctgaacttttccctaagctcatagaggtcctgcct
tctctgcagtctctccaacatctggaccttgagaaaaaccaaataggagactctggagct
gagaagctagctggcgttgtacatttcttggaatgtctgaaattgctaaatctgtctcaa
aatcacattggagatgccggagtggaaaaacttgctaaagctttgccatcagttccttct
ctacagagcctcagcctttatggaaatgcaattgctgacagtggagctgaaaatctggcc
ttggttttaccagacatgaacttcctgcaggatctggatgtgaagtttaacaagttcaca
gacattggagctacaaagctcagcgctgctctgaaaaactgcacaggaatgaagtctctg
gagctgtggaatgactgcattccatatggagtttttgagcaccttcgtcttcaagattca
cggataagatcactttaa
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