Garra rufa (doctor fish): 141319638
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Entry
141319638 CDS
T11039
Symbol
dhx58
Name
(RefSeq) ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
141319638 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
grf04054
]
141319638 (dhx58)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141319638 (dhx58)
Pattern recognition receptors [BR:
grf04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
141319638 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
141319638
NCBI-ProteinID:
XP_073689365
LinkDB
All DBs
Position
1:complement(45421540..45431972)
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AA seq
679 aa
AA seq
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MDFNLRPYQEEVVQAALRGQNSIIWLPTGGGKTRAAVYVTKNHLETTANAKVAVLVNKVH
LVDQHFAKEFNPFLASRYKVTAISGDSNEKDLFGTLVKGSDLVICTAQILENALTNTEEE
KHVELTDFTLLVIDECHHTQKEAVYNKIMGRYVEKKVRKEGNLPQILGLTASPGTGGNRT
LDKAVEHVLQICANLDSVIVSTKNFTPVLQKVVPRPRKQYDIVEKRPLDPFGDHLKMMMV
MIHEFMPPTVSRSLREMGTQEYEADVVELEKEGVKTESRLIAQCALHLRQYNDALLINDT
VRMVDAFRVLDEFYNSRKTRMLDVTDYFLQGVFDENRVELKQLASNALYENPKLAKLQHT
LQDEFHNEKSRGILFSKTRRGTHCLYDWVNTNPELQKVNITAGILTGAGTGANHMTQNKQ
KETIQHFREGILNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARAMNSVYS
VVAEEGGRELRRELINEYLEGLTARAIDQVQQMSPRDFRLKISELQQIAVMIRIQTERKK
DAKKQRYSPGQVQFQCRGCFLPVCTGEDFRKIENTHHVNINTEFERHYRTGGPVVLERSF
EDWEPGRVINCRNCGKDWGMEIKFKKVVILPCLKIKSFSLKTSEGTKTPKYWKDTEFQVK
AFDFIDDMSSRFPGLDLDD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggacttcaatcttagaccgtaccaggaggaggtggtgcaggcagcactcagaggccag
aacagcatcatctggcttcccaccggtggaggaaaaacccgtgctgcggtttacgtcaca
aagaaccacctggagaccacagccaatgccaaagtggcagtgcttgtcaacaaggtgcat
ctggtagaccagcactttgcaaaagagttcaacccttttcttgcgagtagatacaaggta
acagctatcagtggggacagtaatgagaaagatttgtttgggactctagtcaagggctca
gacctggtcatctgcacggctcagatcttggagaatgccctgaccaacacggaggaagaa
aaacacgtggagctcactgacttcactctgctggtaatagacgaatgtcaccatacacaa
aaggaggccgtctataataagatcatgggccgctatgttgaaaagaaagtgagaaaagaa
gggaatctgcctcagattttgggcctcacagcatcacctggtacaggaggaaataggaca
ctggataaagctgttgaacatgtcctgcagatctgtgccaatctggattcagtaattgtg
tccaccaagaattttacaccagtgctgcagaaagtcgttcccagacccagaaagcaatat
gacattgttgaaaaaagacctctggatccatttggcgaccacttgaagatgatgatggtg
atgattcatgagtttatgccaccaactgtgagtcgcagcctgcgagagatgggcacccag
gaatatgaagctgatgtggtagaactagagaaagaaggtgtaaagacagaaagcagactg
attgctcagtgtgcattgcatctgcgacaatacaacgacgctcttctcattaatgacacc
gttcgcatggtggatgcgttccgggttctagacgagttctacaattcaaggaaaaccaga
atgctggatgtaacagactactttctccagggagtttttgatgagaaccgcgtggagctt
aaacagctggcatcgaatgccctctacgaaaaccccaaactggccaagttgcaacacaca
ttgcaggatgagtttcataatgaaaagtctcgtggtatcctcttctcaaagacccgcagg
ggcacccattgtctgtatgactgggtgaacactaaccctgagctgcagaaagtcaacatc
acagctggcattctcactggagcgggtacaggtgcaaatcacatgacgcagaataagcaa
aaggaaaccatacaacattttagagaaggaatactcaatctcctcatctccaccagtgta
gctgaggaaggacttgatattccagaatgcaacttagttgtacgttacgggctgttgacc
aatgagattgctcagcagcaggccagtgggcgggctcgagctatgaacagcgtctattcg
gtggtagctgaagaaggtgggcgtgaactacgcagggaacttatcaatgagtatctcgaa
ggtctgactgcaagagccattgaccaagtgcagcagatgagtccaagggacttcagacta
aagatatccgagctccaacaaattgctgttatgattcgaatccagacggagaggaaaaag
gatgcgaagaagcagcgctacagtcctggtcaggttcagtttcaatgcagaggatgcttc
ttgcctgtctgcactggagaagatttcagaaaaatagaaaatacacaccatgtcaacatc
aacaccgagtttgagaggcactatagaacaggtgggccggtcgttctggagaggagcttt
gaagattgggaacctggacgggttatcaactgcaggaactgtggaaaggactggggaatg
gagattaagttcaagaaggtggtaatactcccctgcttgaaaataaaaagcttttccttg
aagacttctgaaggcacaaaaactcccaagtattggaaggatactgagttccaagtaaaa
gcgttcgactttattgatgacatgagcagccgtttccctggcctagacttagatgactaa
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