Garra rufa (doctor fish): 141320087
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Entry
141320087 CDS
T11039
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141320087
04121 Ubiquitin system [BR:
grf04121
]
141320087
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
141320087
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
141320087
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Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
ZBED1_RNase-like
ZBED1_RNase-like_helical
FAM200-ZBED5_RNase-like
hAT-like_RNase-H
DUF8247
Dynactin_p22
Motif
Other DBs
NCBI-GeneID:
141320087
NCBI-ProteinID:
XP_073689389
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All DBs
Position
1:75453278..75455270
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AA seq
508 aa
AA seq
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MPIYTVSKAGFQKMIRTLDKRYQLPSRNYFSQVAIPELYTKSRSEVQLEITAVKFFSTTT
DLWSSRTTEPYISLTVHFVDDEFELKSRCLQTSYFPDDHMGENIAAGLREALAAWDLCED
GLVAVTTDNGANIVKAVALNHWTRFQCFGHRLHLAIENALKDHAQCITRATGICRKIVGH
FSHSWKKRVALKEAQRELNLPEHAMVTDCSTRWGSTQKMIARVLEQQNALSKVLSADRKV
RHLLPSWQDLEILESVNKALSPLQDFTDALSGERYVSISCVKPTLHLLNTSVLAEEEEDT
NLTKSLKSKILAYLNKKYEDSVTQELLNMSSFLDPRFRTQYISEQETQTLKEQVITELID
IHQQQPVAQSTAAMENNPELDAENPPAAKAKKKTLASFFKKTTSTTSAASFDPMVQFREA
VAAELNAYIYMPCVDHEEDPLKWWNSHKINFPRLCKLAQKYLCIQATSSASERAFSTSGN
VVTDHRSCLKPDKVDMLVFLAKNLSIAK
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgcccatatacactgttagcaaagcaggatttcagaaaatgattcgcacactggacaag
agataccagttgccctcacgaaactacttctctcaagtcgcaatacctgagctttacact
aagtcccgtagcgaggttcaacttgaaataactgcagtgaaattcttttcaaccactacg
gacctttggtcaagcaggacgaccgagccatatattagtctgaccgtgcactttgtcgac
gatgagtttgaactgaaaagccgttgcctgcaaacatcgtatttccctgacgatcacatg
ggagagaacatagccgcgggtttgagagaggcactggctgcatgggacctctgtgaggat
ggtttggtcgctgtcacaacagacaacggcgcgaacatcgtcaaagcggtggcgcttaat
cactggactaggttccagtgcttcgggcatagacttcatttggccatcgaaaatgctctg
aaagatcatgcacaatgcattaccagggctactgggatttgcagaaagattgtgggccac
ttctcccatagctggaagaagagagtggccttgaaggaagcccaaagagaactcaacctt
ccagagcatgccatggtgacagactgctcaacacgatggggttccactcagaagatgata
gcaagagtcctggagcagcaaaatgccttgtccaaggttctatctgcagaccgcaaagta
cgacacctactgccctcatggcaggatctggagatcctggaatctgtgaacaaggcactc
agcccactccaggacttcacggatgccctgtcgggtgaacgttatgtgagcatatcttgt
gtaaaacctactctgcatcttctgaacacctcagtgctggctgaagaggaagaggacact
aacctgaccaaatcactgaaatcaaaaattctggcctacctcaacaagaaatatgaagac
agtgtcacacaggaactgctcaacatgtcctctttcctagacccaaggtttcgaacacaa
tacatctctgagcaggagacccagaccttaaaggaacaagtcatcactgagttgattgac
attcaccagcagcagcctgtagcccaaagcactgcagcgatggagaataacccggaactg
gatgcagaaaatccacctgctgctaaggccaagaaaaaaaccctggccagtttctttaag
aaaaccacaagcacaacatcagcagcatcatttgatcccatggtgcagtttagagaagca
gtagctgctgaactcaatgcttacatttacatgccatgtgtagaccatgaagaagatcca
ctaaaatggtggaacagtcacaaaataaacttccctaggctatgcaaactagcacagaaa
tatctgtgcatacaagcaacaagctctgcatcagagagagcttttagcactagtggtaat
gttgtaacagatcatcgctcctgtctgaaaccagacaaggttgacatgcttgtttttttg
gcaaagaacctctcaattgctaaatag
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