Garra rufa (doctor fish): 141325468
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Entry
141325468 CDS
T11039
Symbol
kcnma1a
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1a isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
141325468 (kcnma1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
grf04040
]
141325468 (kcnma1a)
Ion channels [BR:
grf04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
141325468 (kcnma1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
141325468
NCBI-ProteinID:
XP_073690262
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Position
2:complement(34929037..35204905)
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AA seq
1289 aa
AA seq
DB search
MLAVADGNGSYGRSSRMSNNFNFNKNPDSSVSISKMDLIIPFSADVPCDNNGQRMWWAFL
ASSMVTFFGGLFIILLWRTLKYLWTVCCHCNIKSKEAQKVNNPMNSQADGAPKTLNDKEE
APASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQNFY
KDFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLG
LRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWEN
FQNSQPLSYWECVYLLMVTMSTVGYGDVYARTTLGRLFMVFFILGGLAMFASYVPEIIEL
IGNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNL
ELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVI
SIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQGLST
MLANLFSMRSYIKIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTVCELCYVKLKLLL
IAIEYKSEQRESSILINPGNHVKMQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRI
KKCGCKRIIYPKMSVYKRMKLACCFDCGRSERDCSCMSGSVHSNMDSLQRAFPLSSVSVH
DCSTSLRAFEDEHPSTLSPKKKQRNGGMRNSPNCSPKMMRHDPLLIPGNEQIENMDANVK
RYDSTGMFHWCPSKEIEKVILTRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRAS
NFHYHELKPIVFVGSLDYLRREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILS
ANQNNIDDASLQDKECILATLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGL
VRQASITTGSNIPIITELAKPGKLLPLVSFSQEKNSGTNIQMITELVNDSNVQFLDQDDD
DDPDTELYLTQPFACGTAFAISVLDSLMSATYFNDNILTLIRTLVTGGATPELEALLAEE
NALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYR
LRDAHMSTPSPCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQSRASLSHSSHSSHSS
SKKSSSVHSIPATNRQNRSSKAREARDKQNATRMNRMGPEKRWFTDEAENAYPRNIQIKP
MSTHMANQVNQYKSTSSLIPPIREVEDEC
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgctagctgtggcagatggcaacggttcctatggcagaagctctagaatgagtaataat
ttcaattttaataaaaacccggactcttctgtctctatatcgaagatggacctgatcatc
ccgttctcagcagacgtaccctgtgacaacaatggtcagcgcatgtggtgggctttcctc
gcctcatccatggtgacgttcttcgggggtctcttcatcatcctcctgtggaggaccctc
aagtacctgtggactgtctgctgccattgcaacatcaaaagcaaggaggcacagaaggtg
aataaccctatgaacagtcaggctgatggcgcaccgaagaccctgaatgataaagaagaa
gccccagccagtgaggtgggctggatgacctctgtcaaagactgggcgggggtcatgatc
tcagcacagacccttactggcagagttctggtggtgttggtctttgcactcagcatcgga
gctctgggaatatacttcatagattcttcggatcctatagaatcctgtcagaatttctac
aaagacttcacgttacaaattgacatggcgtttaacgtgttcttcttgctctactttggc
ctgcgtttcatagcagccaatgataagctgtggttctggttggaggtgaactcagtggtg
gacttcttcaccgtaccgcctgtgtttgtgtcagtgtatctgaacagaagctggctgggt
ctgaggtttctaagagccttgagattgatacagttctcagaaattttacagtttttgaat
atcttaaaaacaagtaattccatcaagctggtgaacctgtgttccatcttcataagcaca
tggctcactgctgcaggattcattcatctggtggaaaactcaggggatccatgggaaaac
ttccaaaactcgcaaccgctctcatattgggaatgtgtgtacttattaatggtcactatg
tccacggtgggatatggagacgtctatgcaagaaccactcttggacgcctttttatggtc
ttcttcattcttggtggtctggccatgtttgccagctacgtccctgaaatcatagagtta
ataggaaaccgcaagaaatatggtggttcctatagtgcggtaaatggcagaaagcacatt
gtggtctgtggtcatatcacgctcgaaagtgtttccaacttccttaaagacttcctacac
aaggacagggatgatgtcaatgtagaaattgtttttcttcataatatttcccctaatctt
gagctggaagccttgttcaaacgtcacttcactcaggtggaattttatcaaggatcggtc
ctcaacccacatgatctagcaagagtaaagatcgagtcagcggatgcctgcttgattctt
gcaaacaaatactgtgcagaccctgatgctgaagatgcctctaatatcatgagagtaata
tctatcaagaactaccatccaaagatcagaataatcactcaaatgttgcagtaccacaac
aaggcccatctgctaaacattcccagctggaactggaaggagggtgatgatgcgatctgc
ctggccgagctgaaggcaggcttcatagcccagagctgcctggcacagggcctgtccacc
atgctcgccaacctcttctccatgaggtcatacatcaagattgaggaggacacatggcag
aagtattatctggagggagtggccaatgaaatgtacacagagtacctgtccagtgccttt
gtggggctttcatttcctacagtttgtgagctgtgctatgtgaagctcaagttgttgttg
atcgctattgagtacaagtcagagcagagggaaagcagtattctgatcaacccgggaaat
cacgttaagatgcaggaagggacattgggattctttatcgccagtgatgccaaagaagtg
aaaagagcatttttctactgcaaagcatgtcatgatgacatcacagatcccaaaaggatt
aaaaagtgtggctgcaagagaatcatttaccccaagatgtccgtctacaagcgaatgaaa
ctggcatgttgttttgattgcgggcgttctgagcgcgactgctcgtgcatgtcaggcagt
gtacatagtaacatggacagtcttcagagggccttcccactttcttctgtctctgttcat
gattgctcaaccagtttacgtgccttcgaagatgagcatccgtcaacactgtcacccaaa
aagaagcaacgcaacggaggcatgcgaaattcacccaactgctcacccaaaatgatgaga
cacgaccctctactcattccgggaaatgagcagattgagaacatggatgctaatgtgaaa
agatacgactctactggaatgtttcactggtgtccatccaaagagattgagaaagtcatt
ctgacacgcagtgaggcctccatgacggttttaagtggacatgtagtagtctgtatattt
ggagacgtcacgtcagctttagtggggcttcgaaacttggtgatgcctttgagagcaagc
aacttccattaccacgagctaaagcccatcgtgttcgtgggctcgttagattatctgaga
agagagtgggaaacccttcacaacttccccaaagtctccatcttaccgggtacgccatta
agtcgagctgatttaagggccgtcaacatcaacctctgtgacatgtgcgttatcctgtca
gccaatcagaacaatatcgacgatgcttcactgcaggacaaggaatgcatcttggcgact
cttaacatcaaatctatgcagtttgatgacagcattggggtcttgcaggctaattcccaa
ggtttcacacctccagggatggataggtcatctcctgataacagtccagtgcacggctta
gtgcggcaggcatccatcaccacgggatcaaacatccctatcataactgaactcgctaag
cctggcaaactactgcctttggtttcattcagtcaggaaaaaaacagtggaaccaacata
caaatgataacagaactggtgaatgactccaacgttcagtttttggaccaagacgacgat
gacgacccagatacggagctgtatctgacccagccgtttgcctgcggaaccgcgttcgcc
atcagcgtgttggactccctgatgagcgcgacatacttcaatgataatatcctcaccctg
atccggacgctggtcacgggaggcgccactccggagctggaggccctgttggctgaggag
aacgcgctgagaggtggctacagcacgccgcagacgctggctaacagggacaggtgtcgg
gtcgcccagctggccctctacgatgggcccttcgcagacttgggggatggtggctgctac
ggagacttattttgtaaagcattaaaaacatacaacatgctgtgctttggaatctataga
ttgcgagatgcacatatgagtacaccaagcccgtgcacaaaaagatatgtcatcacaaac
ccgccttatgagtttgagctggtgcccacggacctgatcttctgtctgatgcagtttgac
cacaacgcgggccagtcccgagcgagcctgtcccattcctcccattcctctcattcgtcc
agcaagaagagctcatctgttcactccatccctgccacgaaccggcagaatcgcagcagc
aaagcacgtgaagcccgtgacaaacagaatgcaacaaggatgaatagaatgggcccagaa
aagagatggtttacagatgaagcagaaaacgcatacccaaggaacattcaaatcaagccc
atgagcactcacatggccaaccaagtcaatcagtacaaatccactagcagtctgattcca
cctatccgagaagtcgaagatgaatgctga
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