Garra rufa (doctor fish): 141330961
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Entry
141330961 CDS
T11039
Symbol
pkd1l2a
Name
(RefSeq) polycystin-1-like protein 2
KO
K04988
polycystin 1L2
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
grf04040
]
141330961 (pkd1l2a)
04091 Lectins [BR:
grf04091
]
141330961 (pkd1l2a)
Ion channels [BR:
grf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
141330961 (pkd1l2a)
Lectins [BR:
grf04091
]
C-Type lectins
Others
141330961 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Lectin_C
SUEL_Lectin
Ion_trans
REJ
GPS
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
141330961
NCBI-ProteinID:
XP_073691874
LinkDB
All DBs
Position
3:10355164..10385771
Genome browser
AA seq
2482 aa
AA seq
DB search
MVNHALYTLFLIVSFHVISIWSDDEEVLSCPEHQQAFESSCYEFVALQRGFLSAQAWCER
GGGHLAFIQNDETQQFLQKHLQPEQDWWIGLAPVSTNLTLDSAAIEGPLSWLDGSDVSYS
NWLQEPSLNASCGYIRRNYGFQWETTSNCSQEMHFICEFESGRSLACVDHNATLQCGSGQ
VIEIDDSFYGRKTVHYCRRSHAPSHESPQQEECSWVDIVDTVSEHCHGLQVCQAAADISS
FGEPCPVLGSYLSVEYHCKDALHLLMSKLAAVFDNITMTVKWLLHPFQGNLTCTLNAGDG
HIIDNYSPEEMENVVHKYSHAGVYTVMVECSTSEWHVSAYKSITIQELLGEFGTIKCHSM
NQSTDYSSCKALYNNPLSIQVALDAGTNVTYKIQLGNTQLASTSTIRGIVPHNITISPEV
QQQLGPGCHQLTVVALNGVTAVDRSTILELCLLEPVEGLTVDVEPEHEQCPPHALYVNVS
LAQGAPMQLHFLVSGANHTFSEKHEMLQGSPQVFLISNTIQGELNVVVRAENSFSSMEMD
GGNTTVYCHNETVKQHDEDMISEHVKTARASDLKITVDPEVPVIGTTSVKLYVDGLEDDS
AIWKCYEACPCSDEVKNRDYEISEACLPPVYSFSVYTVHTKSHGVTQFGTRCITVIPREN
LKLSVTCSNCNPVNVADGVNLQVQCEGCQKIVWYIESRKDFTGSLSHCHSESVKKPLIQK
AEDSSSFTIESDALRKAKQDITVVVYAIKDSLSGSARYTVPIADTSSIEDSSVEPTLPTH
VTDKSLNSVMPPVVLSPPSCIISPLVGDVLSPFKISCSVDPSFCKAGSCIFCFKTARGDY
FYCGAEPTVESLYLPLGDKHNNYRLMVDISVKNAEGVTADTAVTTRVKDTSSNHTVGDLQ
VLVSNQVSQLQQQGRLTGAALAQMFQSVSSRLNEALPEEQHDSVKKQLREQMLQSLSAAT
SSFPPKNPAEVQISANVVVGLTTQGHELTDTAQLHATYLLTNLSKSLVSLTLSAKEFSEQ
ILQASTPIIDAVSNIIKVSSSTSKQNEITSQLLNTVDNVQSALLTGKKVNQEPIILSSSA
FGLYVNRISSDGLQKQTFKIQNNSSASFILPSLGSNVLSPDEPVDVRMTSFGINPFSWHE
GEHISGSVGSLSLTKMNGSVIPVANLTEEIEILLPRTEMAEVNQTLLELANFSTVVINVT
TPNISLVFKLDPSEETPLQLLLGFQDYPNDTNYEAQIQLPQDGDSEERYTWVLNPTEMTI
EVGVYYLLVRPVVGAGVNSTNASVFITTIAAHCLYWDEIKANWSGDGCRVGPRTTTLVTQ
CLCTHLTFFGSSFFVMPNVVDVSRTAELFATFVNNPVVVCFVGAIILAYLLVVIWARRKD
IQDAVKVKVTVLEDNDPLAEYRYLLSINTGHRRGASTSSQVTVTLQGTEGESEPHHLTDP
EKPVFERGGLDMFLLTTPFSLGELQSIRLWHDNSGQHPAWYVNKVMVQNLENGQKWHFLC
NSWLSIDLGECTLDKVFPVATETDLKRFSNLFFMKTAKDFRDGHIWFSVISCPPSSNFTR
VQRVSCCFSLLLCTMLTSIMFWGIPSDPSEQTMDLGQIEFTWQQVMIGIQSSIIMFPINL
LIVSIFRNARPREQKSESSSKQQLKIDPKKHSKTGRVSPNQPPHNNHKEITPDTVIKDIK
RIAQSLYKVMRRPVPRIELDSTKTDINNLLSLVEEIIRQHNRVGNEFYTDSSKKEKTFAA
SLESVNLKETSFCERSEQNEKHSIYSQYLYKQLQNVERELRHLGPSSFSKPDSYNQAVLQ
VQGMKNLLDPHVSSGSVSGLHTRSSSPSEGNSGDSKKCCQKGLPWWFVFVGWFLVLATSG
VSAYFTMMYGLTYGKERSISWLISMVVSFFESLFITQPVKVLGFAVFFALVLKTVDQEDY
GDVPIYGTLPNTDDPDAIKIARRDSTCSFYQPPPPTDIEKMRNNMIKEQKVFALIREILI
YVGFLWMLLLVAYGQRDPHAYYLTHHIRQSFSNGISETMNHKDILNWAKSSLLSNLFGEY
PGFITDGNSKLVGNARLRQVRVKKDSCKIAKTMQYSVADCHAPYSWEVEDMGSYSPGWNW
TKNVNGSKIVQTPWLYQTQAKLRSNPVWGGLALYKGGGFVVELGPDQKNASSLLQYLFDN
IWLDVYTRAVFVEFTVYNANVNLFCIVTLIFETTGVGAFQYRNEVQTVHLYQSTGGFHVF
VMASEAIYFLFILYYMFVQGKLIKEQKWAYFRSKWNLLELAIIILSWSALSVFVKRTILG
NRDIEYYQNNKDMFASFYETATADAVLGYLIAFLVLLATIKLWHLLRLNPKLHMITSTLQ
RAWTDISGFIVVMTIMFLAYSIACNLIYGWRLYSYRTLLEAAQSIICLQLGIFNYDEVLD
YNPVLGAFLIGSCIIFMTFVVLNLFISVILVAFNEEQLHPTPSEEEEIVDLMLMKICSLL
GIKCKKKLIDADASMTTASVIS
NT seq
7449 nt
NT seq
+upstream
nt +downstream
nt
atggtcaatcacgctctctacactctgttcctaatagtgagttttcatgtcatctcaatc
tggagtgatgatgaggaggtactttcctgcccagagcaccagcaggcatttgagagctcc
tgctatgagtttgtggctctgcagcgaggtttcttaagtgctcaagcttggtgtgaacgg
ggtggtgggcatctagccttcatccagaatgatgaaacacaacagtttctccaaaaacac
ctgcagccagagcaggactggtggataggacttgctcctgtctccaccaacctcaccctg
gactctgctgccattgaaggccccttgtcctggttggatggctcggatgttagttattcc
aactggctccaggagccctcactgaacgcatcctgtggctacatcagaagaaattatgga
tttcagtgggaaaccaccagtaactgcagtcaggagatgcacttcatctgcgagtttgag
tctgggcgctctttagcctgcgttgatcataatgctacgcttcagtgtggctctgggcaa
gtgatagagattgatgacagcttctacggcaggaagacggtacattactgcaggagaagc
cacgctccctcacatgaatctccacagcaggaggagtgcagctgggtggatatagtagat
actgtgtcagagcactgccacggactgcaggtgtgtcaggctgctgccgatatttcatct
tttggagagccgtgccctgtgctgggaagctatttgtcagtggaatatcactgcaaagat
gctcttcatttgctgatgagcaagctggctgctgtctttgacaacattaccatgacagtg
aagtggttgctgcatccatttcaaggcaacctcacatgcacactgaatgctggagatgga
cacatcattgataattacagtccagaagagatggagaatgtggtgcataagtacagccac
gctggagtgtacactgtcatggtggagtgcagtactagtgaatggcatgtgagcgcctac
aaaagcatcactatccaggaactgcttggagagtttgggactataaagtgccacagcatg
aatcaatccacagactactccagctgcaaagcactttataataaccctttgagtatccaa
gtggcattagatgcaggaacaaatgtaacatacaaaattcagcttggaaatacacagctg
gcctccacttccactatcagagggatcgttccccataacatcaccatatctccagaggta
cagcagcagctaggaccaggctgccaccagcttactgttgtggctctcaatggggtgaca
gctgtggatcgctccaccatcctagagctgtgcttgctggagccagtggaaggcctcaca
gtggatgtagaaccggagcatgagcagtgcccgccccatgccctctatgtcaatgtgtct
ctggctcaaggggctccaatgcaactacattttctggtgtctggagccaatcacaccttt
tctgaaaagcatgagatgctgcaaggaagcccacaggttttcctcatctcaaacacaata
caaggcgaattaaatgttgttgtcagagcagagaattccttctcaagcatggaaatggat
ggtggaaacacaacagtgtactgtcacaatgaaacagtgaaacaacatgatgaagacatg
atcagtgagcatgtgaaaactgccagagccagtgatctaaagatcactgtagatccagag
gttccagtcatcggcactaccagcgtcaagctatatgttgatgggttagaagatgacagt
gctatctggaaatgctatgaggcttgcccttgttccgatgaagtgaaaaacagagattat
gagatatccgaagcttgtcttccaccagtgtacagtttctctgtgtatactgtacatact
aagtcacatggtgtcacacagttcggaaccagatgcatcactgtcattcctagagaaaat
ttgaagctatctgttacctgttccaactgcaatccagtaaacgtcgctgacggtgttaat
ctacaggtgcagtgtgaaggatgtcaaaaaattgtttggtacattgagagcagaaaggac
tttacaggttcactaagtcactgtcactcagagtcagtgaaaaagcctttgatacagaaa
gcagaggacagcagctcttttaccatagagagtgatgcactacgaaaagcaaagcaggat
atcacagtggtggtttatgctatcaaggacagcttatctggatctgctagatacactgtt
ccaattgctgatacatccagtattgaggattcatcagtagagccaacattgccgactcat
gttactgacaaatcgctcaactctgttatgccccctgtcgtcttgagtcctccctcctgc
atcattagtcctcttgtgggtgatgttctctctccctttaagatcagctgctctgttgat
ccatctttttgcaaagccgggtcctgtattttctgcttcaaaactgccaggggtgattat
ttttattgtggtgccgagcccacagtggagtcactttacctccctctgggggataaacat
aacaactacagactgatggtggacatcagtgttaagaacgcagaaggtgttacggctgac
actgctgtaaccactcgggtaaaggacactagtagtaatcacacagttggagatctccag
gtgctggtttccaaccaggtgtctcagctacagcaacaaggtcgacttactggggcagcg
ctggcacagatgttccagtctgtgtccagcagattaaatgaggcattacctgaagaacag
catgacagtgtcaaaaaacagctgagagaacagatgttgcagagtttgagtgctgccacg
agttccttccctccaaagaatccagcagaggtgcagataagtgctaatgtggttgtaggc
cttacaacacagggtcatgagctgacagatactgctcagttacatgctacttatctgcta
acaaacctcagtaagtccttggtctccttgacgctctctgctaaggagttctctgaacaa
atactgcaagcatccacgccaattattgatgctgtcagtaacatcatcaaagtttcttcc
agtacttctaagcagaatgagatcaccagtcaattactaaacactgtggacaatgttcaa
agtgccttgttgactgggaaaaaggtgaaccaggagcccatcattctcagttcttcggct
tttggtttatatgtcaacagaatatcatcggatggtcttcagaaacagacctttaaaatt
cagaacaacagctctgccagttttatcctaccatctctgggctccaatgttttgtctcca
gatgaaccagtagatgtgcggatgacaagttttgggataaatccattctcatggcatgag
ggcgagcatatcagtggatcagtggggtctctctctcttaccaaaatgaatggctctgtg
attccagtggcaaacctcactgaggagattgagatcctcctaccaaggacagagatggca
gaggttaaccaaactcttctggaactggcaaacttcagcactgtggtcattaatgtgact
acacccaatatatctttggttttcaagttagacccgtcagaggagacacctctgcagttg
ctcctgggttttcaggactaccctaatgatacaaattatgaggctcaaatccagctacct
caagatggtgactctgaagagaggtatacatgggtgctcaaccctacggagatgacaata
gaagtaggtgtttactaccttcttgtgaggcctgttgttggtgcaggggtgaattcaaca
aatgcctcagttttcatcacaactattgctgctcactgtttgtactgggatgagataaag
gccaattggagtggtgatggctgtagggttggccctcgtactacaacattggttactcaa
tgcctgtgtacccatttgaccttttttggaagctctttcttcgtaatgccaaatgtggtt
gatgtgtcccgcactgctgaactctttgccaccttcgtcaacaatccagtggtggtgtgt
tttgtaggcgccatcatcctggcttacctgttggttgtgatatgggcacgaagaaaggac
attcaggatgcagtcaaggtgaaggtcacagtacttgaggacaatgatcccttagctgaa
tatcgttacttgttaagtatcaacacaggacatcgtcgtggggcctccacctcttctcaa
gtgacagtgactctacagggcacagagggagagagtgaacctcatcatttgactgaccca
gaaaagccagtctttgaaaggggaggactggacatgttcttgctgaccacccccttctca
ctgggagagctacaaagtatcaggctttggcatgacaattcaggacagcatcctgcttgg
tatgttaacaaggtaatggtacagaacctggagaatgggcagaaatggcacttcctgtgc
aactcatggttgtccattgacttgggagaatgtacactagataaagttttccctgtagca
acagagacggacttgaaaaggttcagtaatttgttcttcatgaagactgcaaaagatttc
cgtgatggtcacatctggttctctgtaatcagttgccccccaagtagtaattttacacga
gtgcagcgtgtctcctgctgtttttcgctgctgctctgcactatgttgacgagtatcatg
ttctggggtatcccgtcagacccctcggagcagaccatggacctgggtcagattgagttc
acctggcagcaggtcatgattggcatccaaagttccattatcatgtttcctatcaatctc
ctcattgtgagcatcttcagaaatgctcggccaagagaacaaaagtctgaatcttcttca
aagcaacagttgaagatagatcccaaaaagcatagcaaaacaggacgagtttctccgaat
cagcctccacacaataatcataaggaaatcacaccggacactgtgataaaggacatcaaa
cggatagcacagtcactctataaggtcatgagaagacctgtaccaaggatagaactggac
tcaaccaaaacagatataaacaatctgttatcactggttgaagagataattcgacaacac
aatcgagttggaaatgagttctacactgactcttctaaaaaggagaaaacttttgctgct
tccctagagagtgtaaacctgaaagagaccagtttttgtgagagatcagagcaaaatgaa
aaacacagcatctacagccagtatctctacaaacaactgcaaaatgtggagagagagctg
agacatctgggcccttcatctttctctaagccagacagctacaaccaggctgtattgcag
gtccaaggcatgaagaacctacttgatcctcatgtctcctccggctctgtcagtggtcta
catacccgtagctcaagcccctcagagggcaacagtggagacagcaaaaaatgttgtcag
aaaggcttgccctggtggtttgtgttcgttggttggtttcttgttttagccaccagtggt
gtttcagcatacttcactatgatgtatgggttgacctatgggaaggagcgctccatcagc
tggctcatctcgatggtggtgtcattctttgaaagcctcttcatcacccagcctgtaaaa
gtactgggctttgcagttttctttgctttggtactcaaaactgttgatcaagaagattat
ggagatgttccgatttatgggactctgcccaacacagatgatccagatgcaatcaaaatt
gcaaggagagacagcacatgcagcttctatcagcctcctcccccaaccgacatagaaaag
atgagaaacaacatgatcaaggagcagaaagtttttgcactaatccgagagattctcatt
tacgtgggattcctgtggatgcttctcttggttgcgtatggtcagcgagatccacatgca
tactaccttacccatcacatccggcagagtttcagcaatggaatttcagagactatgaac
cacaaggatatattaaattgggcaaaatcctccttgctcagtaatctgtttggggaatat
ccaggtttcataacagatggaaactcaaaacttgttggcaatgctcgactccgccaggtt
agggttaaaaaagactcttgtaaaattgccaagaccatgcagtactctgttgctgactgc
catgccccatactcctgggaagtggaggacatggggtcatacagtccaggctggaattgg
actaaaaatgtgaatggctctaagattgtacaaacaccttggctctaccaaactcaggcc
aaacttcggtccaaccctgtttggggtgggctagccctttataagggtggaggatttgtg
gtggaactaggtccagatcaaaagaatgcaagcagtcttcttcaatatctttttgacaac
atctggctggacgtgtatacacgggctgtctttgtggagttcacagtttataatgcgaat
gtgaacctcttctgcattgtgactctgatatttgagacaacgggagtgggtgcattccaa
tatcgtaatgaggtgcagactgtccacctttatcagtccactggtggctttcatgtattt
gttatggcatcagaggccatctatttcctcttcattctctactatatgtttgtgcagggc
aaactgattaaggagcagaaatgggcatatttcagaagcaaatggaatctcttagagttg
gccattatcattctaagctggagtgcattatctgtatttgtcaagaggacaatattgggt
aatagagacattgagtactaccaaaataacaaagacatgtttgccagtttttatgagact
gccactgcagatgctgtactgggctatctgatagccttcttagttctgctggccaccata
aagctgtggcatctgctgagactcaaccccaagctacacatgatcacctctacactgcag
cgggcatggacagatatttctggcttcattgtggtcatgaccatcatgtttttggcctat
tccattgcttgcaatttgatatacggttggaggctctactcatacagaacattgcttgag
gctgcacagtccattatttgcctacaactgggtatcttcaactatgacgaggttttggat
tacaatccagttctgggtgctttcctgatcggatcctgcatcatctttatgacattcgta
gtcctcaacctctttatatctgtgattttggtggcattcaatgaagagcaacttcatccc
actccctctgaagaagaggagatcgtagacctgatgctgatgaagatctgcagtcttctt
ggcatcaagtgcaagaaaaagctaatcgacgcagatgcttctatgactacagcctcggtc
atatcatag
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