Garra rufa (doctor fish): 141330974
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Entry
141330974 CDS
T11039
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141330974
Membrane trafficking [BR:
grf04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
141330974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_8
TPR_1
TPR_7
TPR_NPHP3
TPR_14
SH3_1
SH3_9
TPR_10
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
141330974
NCBI-ProteinID:
XP_073691888
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All DBs
Position
3:17751884..17776677
Genome browser
AA seq
1321 aa
AA seq
DB search
MSAAVRRNSSKTGGGVESDPNGIRTIRRELSNEYTHNELDNIMKSSSRDFKTSRGSIKGT
SGASDENIPTVLAMQLAMVEGPDRLPADEGTQEVLCRKLCVLEADLSGVVTLISELSAHF
VSINSEERTIFITFKTLEEIWKFSTYYKMGFLGQCMENLLMNQEFWLITLDQHSGIEISI
KEETLNLMYKGFLMQEGSFFGCCTVNQMFDSSTSGSDLYLEKGDIALFEPPFLGSGWTVM
SLADGARGTKPKTALEPVIPFHEWFLKSCPETVLVGGGKDTSDLPFQIAVGVCEATEDYD
ADGPDELSFQAGERIITLGLLVACFDWFMGKLERTGEIGLVKTNLVKTTGSFCEPSDIFL
KDEDRQIVTLDQEKIKEDTIALLKKTCQSDVGTNYKLDLAKEIPGSVQTKTHQTELNNLK
QKAKHILSEIDASQRNDVSSVSIKQQMKKEADDTESSQETPRFFVCSEQDSTSPDGHHTL
LSFLSSRDHQPEFLHLYSAYPEFLISHFEGHSDEEDIVAYLGVARELARKKRVSWAQSRI
CFLLGQLCAGRSKFSQARVYYEEALNVPRDSFTDMFLLSAIYSNLALIYLTQKNPEKCFS
FSERLSALLMAVPDCLFGCEDPELLKYVLKKAVLAKNQPAEARACFLLAKLHLKLKDGMS
AIPFIERLLIIADEVPEACDETLSHVFLVLARLYSDQRLPHLAESCAKRASFQIGATVSH
CLCSVSLLLENASELYGVAIPTQVAPYLTRAAALVPSSEPVLGHVHALCLSWLFHRHSMP
DRAVRYMSTVLDQSGMSSVGHSDTTAALLWLAWLYICNQQPGTALEVLDAVLSSLPEHCT
TQLEGVVYNMRAISYRRSADIRQAAESYRAAIEICEEFEDRHNWAVALANFGFLCLQIKA
KRLAEEYLTQSVELFAELEDEEHEHTFILVLLELGKHFVFQGNHENGKIYYEWALLIAMF
INHIDSQLQATRHLCQLYEEVCPDEAQCIIYNEHQLNLLQRIGDKSLEGEILEKISQLYL
NLATEKANRAALDYTKRSLGIFIDLGKKRKEAHAWLKAGKIYHILQQTELVDLYVQVAQD
MALNTGDTLFTLEMLEAAGDVFFNSSRDREKAICFYRDRALPIAVKTSSVRSQLRLCNKL
SELLLQLGQCSEAIEFTQTALDISISLADHLNERVAFHRLATLYHCLGQFEMAEHHFLKA
LSLCPSPLQYDEEALYYVRVYKTLGDIIFYDVKDPFDAAGYYHLALAAAMDLGNKRSQLE
LCTQLATIYHNFLMDRELSLFFYQRARAFANDLHIRRVNLAPDYSFRTTAQYKNTITGAT
R
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgctgttcgtagaaactcgtccaaaaccgggggcggcgtggagtccgatccg
aatggaattcggacgatacgcagagagctgtcgaatgagtacacgcacaatgaattggat
aatattatgaagtcttcatctagagattttaagacctcaagaggaagtatcaaaggtact
tcaggagcttcagatgaaaatataccaacagttttggctatgcagctggctatggtggag
gggccagatcgacttcctgctgatgagggcacacaggaagtgctttgcaggaaactttgt
gtgctggaagctgacctctcaggggtcgtgaccttaatctctgaactctctgctcatttt
gtatccatcaacagtgaggaaaggactatatttatcacttttaaaactcttgaagaaata
tggaagttcagcacatattacaaaatgggcttcttgggtcagtgtatggaaaaccttctc
atgaaccaagagttctggttaatcaccctcgatcaacattcaggaattgagatctcaatc
aaggaagagacactaaatctgatgtataagggctttctaatgcaagaagggtctttcttt
ggatgctgcacagtaaatcagatgtttgatagctctacgtcaggtagcgacctttatctg
gagaagggggatatcgctctgtttgagcctccattcctaggatcaggatggacagtgatg
tcacttgcagatggggctagaggaactaaaccaaaaacagctctggagccggtcattccc
tttcatgagtggtttcttaagtcctgcccagagacggtattagtgggtggtgggaaggac
accagtgaccttccctttcagattgcagtaggggtatgtgaggccacagaagattatgat
gcagatgggccagatgaactgagtttccaggctggtgaacgcatcatcaccctgggcctg
ctggtggcctgttttgattggtttatgggaaaactggagagaactggggaaattggactt
gtcaaaaccaacctggtcaaaacaaccggttcattttgtgaaccatctgacatattcctg
aaagacgaggacagacaaattgttaccttggatcaggagaaaattaaagaggacactatt
gctttattgaagaaaacatgccagtctgatgttggcacaaactacaaacttgatctggct
aaagaaattccaggatcagttcaaaccaagactcatcagacagaattaaacaatctaaaa
cagaaagccaaacacattttgagtgaaatagatgcgtctcagagaaatgatgtttcatca
gtcagcatcaagcaacagatgaagaaagaagctgatgatacagagtcgtcccaggaaacc
ccacgtttttttgtctgctcagagcaggacagcaccagtccggatggacatcacactctc
ctctcgttcttgagcagccgtgatcatcagccagagttcctgcacttgtacagcgcttac
ccagaattcctcatctcacattttgaaggtcactccgatgaggaggacatagtggcgtat
ttaggcgtagcccgagaactggcacgaaagaagcgtgtctcgtgggcacagagccgaatc
tgtttccttcttggacagctttgtgcagggaggtcaaagttctctcaagctcgggtttat
tatgaggaagccttaaatgtacccagagatagtttcacagatatgtttctgctctctgcc
atttactccaacctggcactcatctacctaacacagaagaaccctgaaaaatgtttcagt
ttttcagaacgcttgtctgctttgttaatggctgtccctgattgtttgtttggctgtgag
gaccctgagctattaaaatatgtactgaaaaaggccgtcctggccaaaaatcagcccgcc
gaggcccgagcctgctttcttctggcaaagctccacctgaagcttaaagatggcatgagt
gcaatcccgttcattgaaagacttttaatcattgctgatgaagttcctgaggcatgtgat
gagacactaagccatgttttcctggtgttagcaagactctacagtgaccagagactgcca
cacttggctgaaagctgtgcaaagagagcatcatttcagataggagccaccgtgtcacac
tgtctttgtagtgtctcgctattgttggaaaatgcatcagagctgtacggagtggccatc
ccaacacaagtggctccatacctgacccgtgccgccgctttagtgccctccagcgagcct
gtgcttggtcatgtccacgctctgtgtttgtcctggctcttccatagacacagtatgcct
gacagagctgttcgatacatgtccactgtcctcgaccaaagcggtatgtccagcgttggc
cattcagacactactgctgctctcctctggttggcgtggctgtacatctgcaaccagcaa
cccggcacagctctggaagtgctagacgctgtgctgtcgtcgctccctgagcactgtact
actcagctggaaggagtggtttacaacatgcgggccatttcatacagacgctcagcggac
atccgacaagctgctgagagttaccgggctgcaattgagatatgcgaggagtttgaggat
agacataactgggccgtagcactggccaactttggattcctgtgtttgcaaatcaaggca
aagagattggcagaggaatacctcactcagtcagtggagctgttcgcagagcttgaggat
gaagagcatgagcatacttttattttagtgcttcttgagttggggaaacactttgttttc
caaggaaaccatgagaatggaaagatctattacgaatgggccctgctgattgctatgttt
ataaatcacattgatagccagttgcaagccacacgtcacctgtgtcagctatacgaagag
gtctgtccagatgaagcccagtgtatcatctacaacgagcaccagctgaaccttcttcag
cggattggagataagagcttggagggagagatattggagaagatcagccagctgtacctg
aaccttgctaccgagaaagccaatagagctgctttagattacaccaaacggagcctaggc
atcttcatcgacttgggaaaaaaacgcaaggaggctcatgcctggttaaaggcggggaag
atttaccacatcctccaacagacagagctagtggacctctatgtgcaggtagcccaggac
atggctttaaacacaggagacacactcttcaccctggagatgttggaggcagctggagat
gtgttcttcaacagttcacgggacagagagaaagccatctgcttttacagggaccgagcc
cttcccattgcggtgaagacgagcagtgtgcgctctcagcttaggctctgtaataagctt
tcagaacttctgctgcagctgggacagtgttcagaggccattgagttcactcaaacagca
ttagacattagcataagtctggctgaccatttaaatgaacgggtggcttttcatcgactc
gccactttgtaccactgtctgggtcagtttgagatggcagagcaccactttctgaaagcc
ctgtctttgtgcccctcacccctgcagtatgatgaggaagccctgtactatgtcagagtt
tacaaaacacttggagacattatcttctatgatgtaaaggacccatttgatgctgctggc
tattatcacctggcgttggctgctgctatggatctgggcaacaagaggtcacagctagag
ctgtgtactcagctggccaccatctaccacaactttctcatggaccgtgaactttcgttg
ttcttctaccagcgggcgcgagctttcgctaatgatctccatattcgccgcgtcaacctg
gcaccggactacagcttcaggaccacagcccagtacaaaaacacaataactggagcaaca
agatag
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