Garra rufa (doctor fish): 141331029
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Entry
141331029 CDS
T11039
Name
(RefSeq) transcriptional repressor NF-X1-like
KO
K12236
transcriptional repressor NF-X1
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141331029
04121 Ubiquitin system [BR:
grf04121
]
141331029
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
141331029
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
141331029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
zf-NF-X1
Motif
Other DBs
NCBI-GeneID:
141331029
NCBI-ProteinID:
XP_073691961
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All DBs
Position
3:28544669..28558510
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AA seq
1096 aa
AA seq
DB search
MAEASVTDTSKLNPESAEFVPQAKPNHPHTKRNYRQQQHHYHNQDWRAYHVRPHHHFRQS
SATKNSQDESENPANNTLPPPERPIREDLRGRGRGGRARGGRGGDGRRSNDHRPPNERWT
KPGSDRDCSGKDRGAFVHERPNSLTSNRFTDEEKKEKTTVEADVRKSYQENRRKQPNKAR
AERSIKEPLHRNQEENQADAGVAKPEAVQEHPEPEQRSHKGWRGGDRHMHPSSQRKGPPP
NLGIERNWREREPAQIRGEERRGAEGEGGRHEESNANRGGARGKRPLMQNPGPRRGGGPE
RRTGPVKRMEAPKSKETHTGCLIEQLTEEKYECMVCCEVIRAMAPVWSCQSCFHVFHLNC
IKKWARSPASQADDGTEGWRCPACQHVALKAPNTYTCFCGKVTNPEFQRTEIPHSCGDMC
GKKRSGGECNHPCNILCHPGPCPQCPAFITKSCNCGRMSKQVRCSQTGPLLCENVCGAHL
NCSEHFCAQVCHSGPCQPCRLRVQQACFCGVVFREVACGTDRENFDGSGYFSCCKPCGKM
LDCQSHRCQQVCHPGQCQSCPLSPKLVRSCPCGQTPLAKLLELGYPERKTCTDPIPSCGK
TCNKPLPCGDGDSIHLCEKLCHEDSCGPCSLTSSIKCRCRSNSKEVPCATIQTERDMVFT
CEKRCSKKRSCGRHKCGELCCVDVEHKCSMICGYKLSCGLHRCQDLCHRGNCLPCWQTSF
DELACYCGETVLFPPIPCGTRPPECKNLCTRSHDCDHPVFHSCHSEERCPPCTYLTKKWC
MGNHEQRSNIPCHLQDISCGLVCDKPLPCGSHRCKKICHRGECQAEGECKQPCTHPRPSC
GHPCAAPCHPGTPCPPTICGAKMALQCDCGRKKETVPCADAASSYQRYAAIAVASKLSDM
QLGESVDIGQLTKKEQRKARLECDQECATLERNRKLAEALQIDQSVDPFNKSASSKYSDT
LKEDARKDFKFVSEIEEEIKNLVELANKGKQPKRSHCFPPMKREHRRIIHELAEAYGVES
VSYDSEPKRNVVVTAIRGKSACPNTSLAALIERETVSRAPPPIAHFKQHISKADNSNAWM
KQSKEEPSIDYFDVQD
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagcctccgttacagacacatcaaagttgaatccagagtctgctgagtttgta
ccacaagctaaacccaaccacccccacactaagagaaattacaggcagcagcagcaccac
taccataatcaggactggagggcttatcatgttaggcctcatcatcacttcagacagtcc
agtgcaactaagaacagtcaagatgagtctgaaaaccctgccaataatacgttaccccct
cctgaacgtcccatcagagaagacttaagaggtagaggcagaggaggaagagcaagagga
ggacgtggcggtgatggtaggcgcagtaatgaccatcgccctccaaacgagagatggaca
aaacctggtagcgatcgcgattgctcaggaaaggaccgtggagcttttgtccatgagcga
cccaactcactcacttctaatagattcacagatgaggaaaagaaagaaaaaacaactgtg
gaagccgatgtaagaaagtcttatcaagagaaccgacgtaagcagcctaataaagcaaga
gctgagagatcaataaaggagcctctgcacagaaaccaagaggagaaccaggctgatgca
ggagttgcaaaacctgaagcagtacaggaacatccagagcctgagcagaggagccataag
ggatggagaggcggagatcgccacatgcatcccagttcccagaggaaaggaccgcctcct
aaccttgggattgagcgtaactggagagaaagagaacctgctcagatcagaggggaggag
agaagaggtgctgaaggtgagggtggaagacatgaggagtccaacgcaaacagaggaggt
gcgagagggaaaaggccactaatgcagaatccagggccgaggagaggtgggggtcctgag
cgacgaacaggaccggtgaagcgcatggaggctcccaaaagcaaagaaacccacacaggt
tgtctaattgagcagctgacggaggagaaatatgagtgtatggtctgttgtgaagtgatc
cgggccatggctccggtttggagctgtcagagctgtttccacgtatttcaccttaactgc
atcaagaaatgggctcgctcacctgcatctcaagctgatgatggcactgaaggttggcgt
tgccctgcatgccagcatgtggcacttaaagccccaaatacgtatacctgcttctgtggg
aaggtgaccaatcctgagtttcaacgcactgagatccctcacagctgtggagatatgtgt
gggaaaaaaaggagtggaggggaatgcaatcacccctgtaatatcttgtgccatcctggg
ccctgcccacagtgtccagcttttatcacaaagtcctgcaattgtgggagaatgagtaag
caggttcgttgcagtcagacaggacctctgctttgtgagaatgtctgtggtgctcatctg
aactgctcagagcacttctgtgcccaggtgtgtcactcagggccatgccaaccctgccga
cttcgtgttcagcaagcttgcttctgtggtgtggtgttcagagaggtggcatgtgggact
gatcgtgaaaattttgatggatcaggatatttctcctgttgcaaaccctgtggaaagatg
ctagactgccagtcccatcgttgtcagcaggtatgccaccctgggcagtgccagtcttgt
ccactcagccccaagctggtgcgcagttgtccgtgtggacagactccattggctaaactt
ttagagcttggctacccggagagaaagacctgtactgacccgatcccctcctgtggcaag
acctgcaacaaaccgctcccatgtggtgatggtgattctatccacttgtgtgaaaagctc
tgccatgaggacagctgtgggccatgctctttgacctcctctattaaatgcagatgtcgc
agtaacagcaaggaagttccttgtgcaaccattcagactgaacgagacatggtgtttacc
tgtgagaagcgctgtagcaagaagcgctcctgcggcaggcacaagtgtggagagttgtgt
tgtgtggatgtggagcataagtgctcaatgatttgtggttacaaactcagttgtggtcta
catcggtgtcaggacctttgtcatcgtggcaactgcctgccttgttggcaaaccagtttt
gatgagttggcgtgctactgtggggagactgtgctcttcccacccatcccttgtggaacc
agacctcctgaatgtaaaaacttatgtacccgaagtcatgattgtgatcatccagtgttc
cattcatgccatagtgaggagagatgtcctccctgtacctaccttaccaaaaagtggtgc
atgggtaatcatgagcaaaggagtaatatcccttgccacctgcaggacatctcgtgtggt
ttagtgtgtgataagcccttaccctgcggttctcatcgctgtaagaaaatatgtcaccgt
ggggaatgtcaggcagagggagagtgtaagcagccatgcactcaccctagacctagctgt
ggacacccctgtgctgctccctgtcacccaggcaccccctgtccacccactatctgcggt
gccaagatggcactacagtgtgactgtggccgaaagaaagagaccgttccttgtgctgat
gcagccagttcctaccaaagatatgccgctattgctgttgccagcaagctgtcagatatg
cagctgggagagtctgttgacattggacagctcacaaagaaagagcagagaaaggccagg
ttggagtgcgatcaagaatgtgctacactagagaggaacaggaagcttgctgaggccctc
cagatcgatcagtcagtggatcccttcaacaagtcagcgtcttccaaatatagtgacact
ctcaaagaagatgcaaggaaagatttcaagttcgtcagtgaaattgaggaggagattaag
aatttagttgaactggctaacaagggtaaacagcctaagaggagtcactgttttccacct
atgaagcgtgaacaccggagaattatccatgagctagcggaggcatatggtgtggaaagc
gtcagctatgatagcgaacccaagcgcaatgtagtggtcactgccatcagggggaaatca
gcgtgtcctaacactagtctggctgctttgattgaaagggaaactgtttccagagcccct
cctcccattgcccacttcaaacaacacatcagcaaggcggacaatagtaatgcctggatg
aaacaatctaaagaggagccctcaattgattattttgatgtgcaggattga
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