Garra rufa (doctor fish): 141331048
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Entry
141331048 CDS
T11039
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04217
Necroptosis
grf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
141331048
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
141331048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141331048
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
141331048
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
141331048
Multi subunit type E3
LUBAC complex
141331048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
zf-RING_2
zf-RING_5
IBR
ubiquitin
IBR_1
Motif
Other DBs
NCBI-GeneID:
141331048
NCBI-ProteinID:
XP_073692001
LinkDB
All DBs
Position
3:30655425..30672070
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AA seq
716 aa
AA seq
DB search
MSLSSGGWTHTPPPAQSSSSHLGHEALQPACSTVLMSVKVSVCHSGIRPLCLPGAGDESL
RLQLSMDPGKAGEFRLALRDISGTAAGRSVCIAEFDLKTVRYEVKSPQCHELSLATPPHD
RITFNFRCEKEAQEWATVVMSSLREAHRVAISSSTEERRLPPQPVDTPSNAPMPCTEEIC
AELVSAIEAGDIRAASVCASSLAKQKAALSIQPSKRNYTDTEMSLAVVVEDASSSCCVTV
KVFPHSSIGALKQQVFTDYGFHPRVQRWVIGQSLCSDHRSLASYGVQQDGDTAFLYLISA
RQARLSQGLYQQDQESALLMPAVVPTTNQPHQEAVSNGPTQNTASRPYSTLPTRLHNSHN
TLSNSAGGTERLGLGNIRDLINLELPQLNDALSPNRTSTQLGWACPTCTYINKPTRPGCE
MCSADRPEGYTVPGNYRPDALELRRIQQEKEAIRQYQQAREAERRENFARLVQMDGQDLV
PNPERVECKICYVELEPGEGVLLRECLHCFCKECLRSVILMSEDPQVACPYRDEAYACDC
ILQEREIRALVSVDDYEHWLQRGLSVAESRCEGSYHCATADCPGWCVYEDTVNTFHCPVC
KKHNCLLCKAIHEGMNCKQYQDDLSARAINDSAARRTRDLLKTLVNSGEAMHCPQCGIIV
QKKEGCDWLRCTVCHTEICWVTRGPRWGPKGPGDTSGGCRCNVNKQRCHPKCQNCH
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgagctcaggcgggtggactcacacacctccgccggcccagtcttcatcgtct
catctcggccatgaggccttgcaaccggcctgtagcactgttttgatgtcggtaaaggtg
tcagtatgccactcaggtatacgaccgctttgtctcccgggggccggagacgaatctctc
cgtcttcagctgagtatggacccggggaaggcaggggaattccgcctcgcgttgcgggac
atcagcggaacagcggctggacgcagcgtgtgcattgctgagtttgacctcaagactgtt
cgctatgaagtcaagtccccacagtgccatgaactgagtttggcaacaccgccacatgat
cgtatcacttttaacttccgctgtgagaaggaagcacaggagtgggccactgtggtgatg
tcatcactccgtgaggcgcatagagtggcgattagttcctccactgaagaaagacggcta
cctcctcagcctgtggatacaccgagcaatgcgcccatgccatgtacagaggagatatgt
gcagagcttgttagcgcaatagaggcaggtgatattcgggcggcatcggtctgtgcatca
tctttggctaaacagaaagctgctctgagcattcagccatcaaaacgaaattacacagac
actgaaatgagcctggcggtggtggtagaggatgcatcctcgtcctgttgtgtcacagtg
aaggtcttccctcactcctcaattggtgctctcaaacaacaggtcttcacagactatggt
tttcatccgcgtgtgcaacgctgggtcatcgggcagtctttgtgctctgatcaccgctct
ctggcttcttatggagttcagcaagatggcgacactgcgttcctttatctcatttctgcc
cgtcaggctcgtctcagtcaagggctttaccaacaagatcaggaaagtgctttgcttatg
ccggctgtggtgccaacgacaaatcaaccccaccaagaagcagtttccaatgggccaaca
cagaacacagcctcaagaccatacagcaccctgcctacaagacttcacaacagccataat
accctgagtaacagtgcgggaggaacagagaggttgggtttgggtaatattcgggacctc
atcaaccttgagctgccgcagctgaatgacgccctgtcgcccaacagaacaagcacacag
ctgggatgggcctgcccaacctgtacatatattaataaaccaacacgtcccggctgtgaa
atgtgtagtgcagaccgacctgaaggctacactgttcctggcaactacagaccagatgct
ctggagctaagacgcattcaacaggaaaaagaagcaataaggcagtaccaacaggccaga
gaagcagaacgcagggagaactttgcacgtctggtccaaatggacggacaggatctggtt
cctaacccagaaagagtggagtgcaagatttgctatgtggagcttgagcctggcgaggga
gtcctgctccgagagtgtctccactgcttctgcaaagagtgtctgcgctctgtgattctg
atgtcagaggatcctcaggtggcatgtccatacagagacgaggcctatgcctgtgactgc
atcttgcaggaaagagaaatcagagctctggtgtcagtagatgattatgagcactggttg
cagaggggtctgtcagtcgcagagtctcgatgtgagggcagttatcactgtgcgacagca
gactgtcccggctggtgtgtttatgaagacactgtcaacactttccactgcccagtgtgt
aaaaaacacaactgcctgctttgcaaggccattcatgaagggatgaactgtaagcagtat
caggatgatctatcagctcgtgccatcaatgactctgcagctcgaagaaccagagacctg
ctgaagactcttgttaattctggcgaggcgatgcattgccctcagtgcggcatcattgtg
cagaagaaagagggctgtgattggctccgctgtactgtctgccatactgagatctgctgg
gtcaccagaggaccacgctgggggcccaaaggtcccggagacacaagtggaggctgccgc
tgcaatgtcaacaaacagagatgccatccaaaatgccagaactgtcactaa
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