Garra rufa (doctor fish): 141331099
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Entry
141331099 CDS
T11039
Symbol
col4a6
Name
(RefSeq) uncharacterized protein col4a6 isoform X1
KO
K06237
collagen type IV alpha
Organism
grf Garra rufa (doctor fish)
Pathway
grf04382
Cornified envelope formation
grf04510
Focal adhesion
grf04512
ECM-receptor interaction
grf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141331099 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141331099 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141331099 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141331099 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141331099 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141331099 (col4a6)
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141331099 (col4a6)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141331099 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141331099
NCBI-ProteinID:
XP_073692086
LinkDB
All DBs
Position
3:33979257..34112897
Genome browser
AA seq
1684 aa
AA seq
DB search
MKLWSFVLPVVLYAVSAQGGSNLQEPCAGRDCSGPCPCLPLKGTRGQPGEPGQMGTGGPE
GVLGVPGPIGPKGEKGHEGRKGPSGPKGDKGPMGVPGFSGNDGVPGHPGQEGPRGPSGLD
GCNGTRGEPGDRARDGIPGLPGSPGFPGPKGQKGEPYYLDLSEQNVIIEGPPGPVGFPGP
AGPRGSDGFPGVPGPPGPPGPPGSPGQGYKGEPGEKGDVGSPGDPGRPLVNGVVELVGFP
KGDKGTKGDKGYAGSPGFPGRQGPPSPFGYRGETGEKGILGLPGLRGPPGLNGPPGLPGI
KGFPGTQGFPGQPGFSGPKGERGEPGPPGPIVGTSNGIKGPPGDPGFPGYPGITGDTGFP
GLPGQPGPPGVPSFLTGRPGVPGFPGGRGPKGPRGNPGRDSYGPEGLSGSQGLPGPPGLP
GPPGTSPNLFLAGLPGFPGRPGQRGPPGNRGFIGFKGENGDCNCLGGGTIGGQGPQGPPG
PTGFAGLNGVKGEIGDIGVPGTRGPQGLDGRAGDRGFRGRKGEKGNSFFPEGRGQKGDMG
QQGLPGPLGESGNPGRDGSPGFPGQPGLPGEPGVGVTGDKGFPGNPGFKGRPGDRGAPGI
GYPGVAGFKGAQGDPGFNGLPGTPGPPGSPGDSCGQARLNDASLDEGGTPLPCRIPGELG
DPGYFGNPGVPGLKGQPGSPGGSGRPGFDGPKGERGDPGSGGRPGPQGFPGPRGDPGLPG
ATNAGLPGPPGRDGFPGSPGAKGEPGVVLGATPGGQGSPGRPGEPGDKGQPGVPGLPGRS
GIDGRSGYPGLKGGRGLDGIPGPIGPIGPPGEIPPGGIPGPRGPPGANGFDGPPGFPGLK
GVRGDPGPPGPGGIKGRPGLSGIPGSQGFRGPPGPPGFGTRPGIPGRPGVKGEKGSFGLL
GFPGLPGSPGVPGGPGIKGLPGFTGQDGLPGGAGSRGTKGERGAPGLPGPSLPVFPVEQL
ERGEKGEPGGGGLPGFPGPRGDKGFPGRPGRDGFPGSPGIADQAKGFPGQPGLPGISGSF
GFPGPKGSPGVMGFPGSPGLRGDDGVPGVQGFPGTPGQPGAKGEKGDSYEFSGPPGPKGV
IGNPGFPGGPGLPGAPGDPGFPGVLGFRGQKGFPGEPGAPGFGGSPGLPGIRGLPGYPGQ
KGRDGDPGRPGVPGPQGEKGFPGSPGLVGLNGLPGSKGQSGVPGVTEGGRTGAPGVNGLK
GERGSSQPGVPGRPGEKGSRGDTGAPGLSGFPGIPGPPGPPSFSNIPGPPGDPGLPGLDG
REGPFGPPGLPGPPGPGTVQGDRGDAGFPGRPGIPGSRGEPGGFGGSGLQGSPGFKGQRG
DPGFSGIPGPPGFPGEPGDYGRNGPKGLKGFPGLKGRPGTVFPRNITGNRPFGEQGPSGL
DGSIGQAGMPGLPGSPGFPGPKGLRGPVGRLGPVGATGSPGTFGDSGPSGIQGPTGTQGA
RGSPGIQGLPGPPARSTGIGYTLVKHSQSTQVPMCPQGMAKLWEGYSLLYVEGQEKAHNQ
DLGLPGSCLPHFNTIPFLYCTVDEICHYASRNDKSYWLSTTAPIPMMPVAGQQISQYISR
CSVCEAPSYAIAIHSQDLTIPTCPQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLED
FRATPFIECNGARGTCHYFANKYSFWLTTVEQNEQFVQGPAQETLKGDEYRSRISRCQVC
MKIL
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttacctgttgtcttgtatgcggtgtctgcacaaggggga
tcaaatctgcaggagccatgtgcaggccgggactgcagtggaccatgcccgtgtttgccc
ttaaagggtaccaggggacaaccaggagaacctggacagatggggaccggtggtcctgaa
ggtgtccttggggtcccaggaccaattgggcccaaaggagaaaagggccatgaaggacgc
aaagggccctctggaccaaaaggagataagggcccaatgggtgttcctgggttttctggt
aatgatggtgttccaggacaccctggtcaggaggggcccaggggaccttcaggtttggac
ggctgtaatggcacacgaggtgaaccaggtgacagagcccgtgatggcattcctggtctt
cccggttctcctggattccctggtccaaaaggtcaaaaaggagaaccatattatttagat
ctttctgaacaaaatgttataatcgaaggccctccaggtccagtgggatttcccggtcca
gcggggcccagaggttcagatggatttcctggtgtgcctggtccacctggtcctcctgga
cctccaggaagtccaggtcaaggatacaaaggagagccaggagaaaagggagatgtgggc
tcgcccggtgacccaggccgcccactggtcaatggagtggtggagcttgttggctttcca
aaaggagacaaaggaactaagggtgacaaaggctatgccggttctccaggttttccaggg
agacaaggacctccaagcccatttgggtatagaggtgagactggagaaaagggaatcctg
ggcttgccaggcttaaggggtccacctggtctgaacggtcctcctggacttcctgggata
aaaggcttccctgggactcagggttttccgggacaaccaggctttagcggcccaaagggt
gagagaggagagccaggtccacctggaccaattgtgggtacatcaaatggaattaaaggt
cctcctggtgatcctggctttcctggttatccagggataactggagatacaggttttcca
gggcttcctggtcagcctggtccccctggagtgccttcttttctcacaggtcgtccaggc
gttcctgggttccctggtggtcgtggccccaaaggaccgaggggaaacccaggtcgggat
tcttatggtcctgaaggtctttctggaagtcagggccttcctggacctccaggtctccct
ggaccaccaggcacttcaccaaacctgttccttgctggactacctggttttccaggtcgg
cctggtcagagaggacctcctggaaacagaggctttatagggtttaaaggagaaaatggt
gactgcaactgtttgggtggaggaacaattggtggacagggacctcaagggcctccaggg
cccacaggttttgcaggactcaatggcgtcaagggagaaattggtgacataggcgtccca
ggaacccgtggtccacagggccttgatggtcgtgcaggtgaccgaggctttagagggcgt
aaaggagagaagggtaattcattctttccagaaggcagaggacaaaagggtgatatgggt
caacagggtcttcctggaccacttggtgaaagcggcaaccctggaagagatggatctcct
ggcttccctggacaaccaggtctacccggggagcctggtgtgggggtgactggagataaa
ggttttcctggtaatccagggttcaaaggtcgtcctggtgacaggggcgcacctggtatt
ggctatcctggtgtagctggattcaaaggtgcacaaggtgatcctggattcaatggtctt
cctggaacacctggacctccaggttctccaggtgacagctgtgggcaggcaaggcttaat
gatgcctctttggatgagggaggaacaccactaccctgcaggattcccggtgaacttgga
gatccaggatactttggaaatcctggggtgccagggctaaaggggcagcctggttcccca
ggagggagtgggcgcccagggtttgatgggccaaagggtgagagaggagatccaggctct
ggaggtcggccaggacctcagggtttccctggacccagaggagatccaggtttaccagga
gcaacaaatgctggcttaccagggcctccaggaagagatggttttccaggttcgccagga
gctaagggagaacccggtgttgttcttggggccacccctggaggtcaaggttctccaggg
agaccaggagagccaggagacaagggtcaacctggtgtacctggtttaccagggaggtct
ggtattgatggacgcagtggatatcctggcttaaagggaggacgaggcctggatggaatt
cctggtcccataggtcccattggtccaccaggagaaatccctcccggaggtattccaggt
cccagagggccacctggagctaatggatttgatggacctccaggtttcccagggctgaag
ggtgtgaggggagatccaggacctccagggcctggtggaataaagggtagaccaggactt
tctggcatcccagggtcacagggatttaggggacctcctggaccccctggctttggaaca
cgtccaggcatacctggaagaccaggagtaaagggggagaaggggtcttttggattgttg
gggttcccaggattacctggttctcctggagtcccaggtggcccaggaattaaaggttta
cctggtttcactgggcaggatggcctacctgggggagctggatcaagaggaaccaaaggg
gagcgtggtgctcctggtcttccaggaccctctcttccagtgtttccagtagagcagctg
gaaaggggtgaaaaaggtgaaccaggaggtggtggactgcctggtttcccaggaccaaga
ggtgataagggttttcctggtagacctggacgtgatggctttcctggatcacctggtatt
gcagaccaagcaaaaggttttcctggccagcctggactcccaggtatttctggctccttt
ggctttcctggtcctaaaggttcacctggagttatgggcttccctggctcaccaggcttg
aggggtgatgatggtgtacctggggttcaagggttcccaggcactccaggacaacctggt
gccaaaggtgagaaaggagattcgtatgaattttctggaccccctggaccaaagggtgtg
attggaaatcctggattcccaggtggtccaggacttcctggtgcaccaggtgatccaggt
ttcccaggagtcttgggatttcgaggccagaaaggttttcctggagagccaggagcacct
ggatttggtggctcaccaggcctcccaggaattaggggtctccctggttatcctggacag
aaggggcgtgatggagatccaggtcgtcctggagttccaggtccacaaggagagaaaggt
tttccaggatcacctggtttagttggactcaatggtcttccaggttccaaggggcagtct
ggagttccaggtgtgactgaaggtggtcggactggagctcctggtgtgaatggcctgaag
ggagagagaggctcatcacagcctggagtacctgggcgtcctggagaaaaaggatctaga
ggagacactggtgcccctggtttgtcaggcttcccaggtattccaggcccccctggccca
cctagtttttctaatatcccaggtcctcccggagaccctggacttcctggattggatgga
cgagaaggtccctttggccctcctggcctacctggtccaccaggccctggaacagtccaa
ggagataggggagatgccggatttcctgggcgaccaggaataccaggatcacgtggagaa
cccggtggttttggaggctctggattacaaggcagtcctggttttaaaggacaaagaggt
gaccctgggtttagtggtatacctggtccaccaggtttccctggagaaccaggagattat
ggcaggaatggacctaaaggattaaagggctttcctggtcttaagggacgtccaggtact
gtgttcccacgtaacataacaggcaataggccatttggagaacagggcccatcaggtctt
gatgggtctattggtcaggcaggaatgccaggcctcccaggcagtccaggatttccaggt
cccaaaggtctcagagggccagtgggtagacttggtcctgttggtgcaactggatctcct
ggaacttttggtgactctggaccttctggaatccaaggtcctacaggaacccaaggagcc
cgtggctcaccaggaatacaaggtcttcctgggccacctgcacgcagtaccggtatcggt
tatactttggtgaaacacagtcaatccacccaggtgcccatgtgtcctcaaggcatggcc
aagttgtgggagggctacagtttgctctatgtggaagggcaggagaaagcacacaaccag
gacctgggattgcctggttcctgcctgccgcatttcaacaccatccccttcttgtactgc
acagtggatgaaatctgccactatgctagtcgcaatgacaaatcctattggctatccacc
acggcacccattcccatgatgcctgtggcaggtcagcagatatctcagtacattagccgc
tgctcagtatgtgaggctccatcttacgcaattgctatccatagccaggatctcaccata
ccgacctgccctcagggctggagaagtttgtggattggttactccttccttatgcacaca
gctgcaggagctgaaggaggcggacagtcattggtttctcccggttcttgtctggaggat
ttccgcgccacccccttcattgagtgcaatggtgcccgtggcacctgccactactttgcc
aacaagtacagtttctggttgaccacagttgagcagaacgaacagttcgtccagggtcct
gcccaggagacgctgaagggagatgagtatcggtcacgcatcagtcgctgtcaagtctgc
atgaagatcttgtag
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