Garra rufa (doctor fish): 141331282
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Entry
141331282 CDS
T11039
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
grf03015
mRNA surveillance pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141331282 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
141331282 (acin1b)
03015 mRNA surveillance pathway
141331282 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141331282 (acin1b)
03041 Spliceosome [BR:
grf03041
]
141331282 (acin1b)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141331282 (acin1b)
Spliceosome [BR:
grf03041
]
Complex C
Other components
EJC/TREX
141331282 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
141331282
NCBI-ProteinID:
XP_073692391
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All DBs
Position
3:complement(48287042..48310315)
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AA seq
1255 aa
AA seq
DB search
MAELEDVTLDGKPLHSLRVADLKAALEQRGLAKSGQKNALIKRLKGALMLENLQRSSTHS
SGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREATEADETQSPAGPEEDEHTP
TKDSTSFLPEKHHIIHPHLPVTQAGGGGLPQDPGLMGSHRLDTGPVPVSQESPDTKAGRI
WHPSFPPGHEEVATPSPPRAVASLSVRVVGQPERQGLPLMMPRSQEREGTAPAEAGPAHS
VLQLSRSAKAAACAQVDSDDNDEDDDDSNDDDEWGPTSKGKKNIRTPPVYTPPAAAPQRS
RRKLQPPQHIPPQPQPVHQPPLQLRQPTPPPSPPPELSFPLPDTPKQSPHDQDEPAGLAE
GAAPGAAMVSPPLLKRQESSSSSRSSSPEPPSTRRPGPLSLLVRKMESEGVFDGAQKLGM
EGEGEMEVEEQKDGEAEAQDSAEQLRGSEVSVSVPTVQQDAQDAELEKRDEWKSSEEREN
EKVDETSAPFHSTSSTISPPRKSRIFSEVPPPDSLTSSSKPEQVSVLTSGPKCSEDVPME
TEASTTTPESEHEDDKKVKVVEKEQPKPAEESEKALKLPHSTSEEGEVDETKDHLRREKG
HERRSSKPSRSSSSDTDSESSSSRSSSSSSQDKSSPSSQKKDEELNKDDVKKGKKAQSSR
EVKQEALSEPAGQVAMELEGRSHSEGAVQQSDHQGADSSDTRPEESSAVKSFAARKISLS
SKTEIASSEAEPVGGASRKRRWGSSTAVTAKKPSISITTESLKTLIPDIKPVQEAVVELH
PDEGRLSGDEGSAGPREREEPEEDQGLKIRRTVTQIVPSDGHENGQKEIKEDEEEEDDEE
EQKWTKGETEKQRKHESSPDATMEIQEGELKKVTPNDSLVRRSISQQKSGVSVTIDDPIR
TARQLSPPRGKTSNIIHVCNLVRPFTLGQLKELLNRTGTLVEEGFWIDKIKSHCYVTYSA
VEEAVATREALHGVKWPTSNPKVLRVDFCEQDELDFHKGLISGDRPGEGHDPHATGTAAR
PAAHHPLPPANHEKEKERERERDGGATAVRDQWAERERAMERRERTRSEREWDRDKVKDF
GKDDRERTRRSRSRDRRRRERGKSKEKRTEKKDKPEEPPVKLLDDLFHKTKAAPCIYWLP
LTEEQATQRALERAERIKEREKRRKELQEEEDKKQEERRERAKGRDREGGNAGGAGVVRR
STEGERDRGKERERERGREAEKRRDGHKGRGSDSKPAGGSRRSQSRSNTSRDRRH
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggcggaactcgaggatgttacgttagacggcaaaccgcttcattcgcttcgagtggcg
gatttaaaagctgccctggagcaaagagggctcgctaaaagtggacagaaaaatgcactc
attaaacgactgaaaggggctcttatgttggagaatctccaacgatcatccacccatagc
agtggtcttcagcccaactctcagattggagaggagatgagtcagaacagctttataaag
cagtacctggccaaacagcaggagctcctccgacagagactggagagagaagcccgggag
gccactgaggcagatgagacacagagtcctgctggccctgaggaggatgaacacacacca
accaaagatagcacttcctttctgccagagaaacatcacatcatacatccacatctgccc
gtaacccaggcaggtggaggagggttgccacaagaccctgggttaatgggatcacacagg
ttggatacaggccctgttccagtgtctcaagagtcacctgacactaaagctgggaggatc
tggcatccttctttccctcccggccacgaggaggtcgcaacaccctctcctccacgtgca
gttgcctccttgtctgtgcgcgtggttggacaaccagagcgtcaaggcctgcctctcatg
atgccccgttcccaagagagagagggaacggccccagccgaagcaggtcctgcccattcg
gtgttgcagcttagccgttccgcgaaggccgcagcttgtgctcaagttgatagcgatgac
aatgatgaggatgatgatgacagcaacgacgatgatgaatggggtcctacctcaaaaggg
aaaaagaacatccggactccccctgtttacactccaccagctgcagccccccaacgatcc
cgcagaaagcttcagccaccacagcacatccctccccagcctcaaccagtccaccagccg
cctctgcagctccgtcaaccgactcctccaccatctccacctccggagctctctttcccg
ttgcctgacactcccaaacagagcccacatgaccaagatgagccggcaggcctagccgaa
ggtgctgctccaggggcagccatggtctctcctccattgctcaaaaggcaggagtccagc
tccagttcgagatccagcagtccagaacccccatccacacgcagacctggtccacttagc
ctgctggtccgcaaaatggaatctgagggcgtgtttgatggtgcacaaaagctagggatg
gagggagaaggagaaatggaagttgaagagcagaaagatggtgaagcagaagcgcaagac
tcagctgagcagcttcgtgggtcagaggtgtctgtgtcagtacccactgttcaacaagat
gctcaagacgctgagttggagaagagagatgagtggaaaagcagtgaggaaagagaaaat
gagaaagtcgatgagacttctgcaccattccattcaacgtcatctaccatttccccacct
agaaagtcacgcattttctcagaggtcccaccacctgattcacttacatcatcctctaaa
cctgaacaggtgtcagttctcacatcagggccgaagtgctctgaagatgttcctatggag
acagaagcctctacaacgacacctgaatcggaacacgaggatgacaaaaaagtgaaggtt
gtagagaaagagcaacctaaaccagcagaagaaagtgaaaaggcgctaaaattgccacac
tccacatctgaagaaggagaagtggatgaaacaaaagaccatctacggagagagaaaggt
catgaaagacgctcgtcaaagccaagtcggtcatcatcatctgacaccgattcagaatca
tcatcctctcgttcttccagctcttcttcacaggataaatccagtccatccagccaaaag
aaggatgaggaattgaacaaagatgatgttaaaaaaggaaagaaggctcagtcttcaagg
gaggtaaagcaggaagctctctctgagcctgcaggccaagttgccatggaactggagggc
cgctctcattcagagggtgctgtgcaacagtctgaccaccagggggcagattccagtgac
acccgcccagaggagagctccgctgtaaaatcgtttgctgcccgcaagatctcgctgagc
agtaaaacggagattgcgtcatctgaggcagagcctgtgggcggagccagcaggaaaaga
aggtggggttctagtacagcagtcacggccaagaagccgtcaatcagcatcaccactgaa
tcgctgaagacattaattccagacatcaagcccgtacaggaggcagtggttgaactgcat
ccagatgaggggcgtctctctggggatgagggctcagcagggcctcgtgagcgagaggaa
ccagaggaggatcagggcctcaagatcagacgcacagtgacacagattgtcccatctgat
ggacacgagaatggccagaaagaaataaaggaagatgaggaggaggaggacgacgaagaa
gagcagaagtggactaaaggagagacagaaaaacaaaggaaacacgagagctccccagat
gctaccatggaaatacaggagggcgagctcaagaaggtcactccgaatgattctttggtg
agacgctccatcagtcagcagaaatcaggcgtgtctgtaactattgatgaccccatacgg
acagctcgccagctctctcctcctcgtgggaaaacctccaacatcatacacgtctgcaac
ctggtgcgacctttcaccttagggcagctgaaggagctgttaaatcggactggtacattg
gtggaggaaggtttctggatcgataaaatcaaatctcactgctatgtcacatactccgct
gtagaggaagctgtggccactcgagaagcactgcatggtgtgaaatggccaacaagtaat
cctaaagtactacgtgtggatttttgcgaacaggatgagttggatttccataaaggtctc
atttccggtgaccgtccaggtgaaggtcacgaccctcacgccacaggaaccgcagcccgc
cctgccgctcatcacccactcccacctgcaaaccatgaaaaagagaaggaacgagaaaga
gagcgagatggaggagctacagctgtaagagatcaatgggcagagagagaacgagcgatg
gaaagaagagagaggactcgttctgagcgggagtgggaccgggataaagtcaaggacttc
gggaaggatgaccgagagagaacgaggaggtcgcgatctcgggatcgaagacgcagagag
agaggcaagagcaaggagaagagaaccgagaagaaagataaaccagaagagcctcctgta
aaacttctcgatgacctcttccacaaaactaaagcagctccctgtatatactggttaccc
ctcacagaagaacaggcaacacaaagagctctggagcgtgctgagcgcataaaggagcga
gagaagaggaggaaggagctccaggaggaagaagacaaaaaacaagaagaacggcgagaa
cgagcaaaaggccgtgacagagagggagggaacgcaggaggagcaggtgttgtgagacgc
tcaactgagggagagagagatcgagggaaggaacgagagagagaaaggggcagagaggca
gaaaagaggagagatggccacaaaggccgcggtagcgactccaaacctgcagggggcagc
agacgctcacaaagccgtagcaacacctccagagacagacgacactga
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