Garra rufa (doctor fish): 141331298
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Entry
141331298 CDS
T11039
Symbol
sf1
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141331298 (sf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141331298 (sf1)
Spliceosome [BR:
grf03041
]
Complex A
Other components
Complex A specific factors
141331298 (sf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_3
Rrn6_K-rich
Motif
Other DBs
NCBI-GeneID:
141331298
NCBI-ProteinID:
XP_073692414
LinkDB
All DBs
Position
3:complement(49169731..49181349)
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AA seq
663 aa
AA seq
DB search
MATGANATPLGKLHPSIGAKRGFDSGPGAGLMAPPGPPVSFPLQNLQQPPLPNPAFSPFP
VAVSSALSNPVGVGLPSQAGSGDFGQKKRKRSRWSSETPDQKTVIPGMPTVIPPGLTRDQ
ERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKKLEEE
RHSLITEMVGLNPEFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIE
KECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQ
GIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSTEPRSITNTTVCTKCGGAGHI
SSDCKFTSSFAQRAGEPPQSAQDKARMDKEYLSLMAELGEAPVPASSGGHNNPPPSGPRP
AGPNNNQPPPNRPPWMNSGPTDNRNFHGMHQGPGGPHNFPPPMPNMGGPPMPPNPNGMPP
PWMQPPPPPMNQGPAPPGHPMGLLPPPMGMMPPPPPPPNNQPPPPPSGPLPPWQQQAPPP
PPTSSMATSAPLPWQQNTTTTSTPATGNLPPWQQPQQTAASAAQPPPPMGTPSMVPPPPG
VQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPMDPNFVTMMGIPGMPPYGMPPAPPPPP
PQS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgggagccaacgcaacccctctggggaagctgcacccgagcatcggcgctaag
cgaggctttgactctggccccggcgcggggttaatggcaccgcccgggcctccggtgtct
ttcccgctgcagaacttacaacaaccgccattaccaaacccagctttctctccgttcccc
gtagccgtgagttctgcgctctcaaacccagtcggagtaggactaccgtctcaggcgggg
agtggagactttggacagaagaagcggaaaaggagtcgctggagcagcgagacccctgat
cagaagaccgtcatcccgggcatgcccaccgtgattcctcctgggctgactcgggaccag
gaacgagcttatatagtccaactgcagatcgaagacctgacacgtaaactgcgtacagga
gacctgggaatccctgttaaccctgaggacaggtctccatctcctgagcccatctacaac
agtgaagggaagaggcttaatacacgtgaatatcggacacgtaagaagctggaggaagag
aggcattctctcattacagagatggtgggactaaaccctgaattcaaaccccctgctgac
tacaaaccaccagctactcgggtcagtgataaggtgatgattcctcaggatgaataccca
gagatcaactttgttgggcttttgattgggccacgtggaaacactcttaaaaacattgag
aaggagtgctgtgcgaagatcatgattcgtggtaaaggctcagtaaaggaagggaaggtg
ggccgtaaggatgggcagatgcttccaggagaagatgaacctcttcatgcactggtcaca
gctaacaccatggagaatgtcaagaaagctgtagagcagattcgtaatatcctcaagcag
ggcattgaaaccccagaagaccagaatgatctgagaaagatgcagctgagggagctggca
agactcaatggcactctgagagaggatgataacagaatcctacggccatggcagagcaca
gagcctcgcagcatcacaaacacaactgtctgtacaaagtgtggtggagcaggtcacatt
tcatcagactgcaagtttaccagttcctttgcacagcgtgccggtgaaccaccccagtct
gctcaggataaggcccgtatggataaagagtacttgtctctcatggcagagctaggagag
gctccagtccctgcatccagtgggggacacaacaatcctccccctagtggacctcgtcct
gcaggacccaataacaaccagccaccaccaaatcgtcctccttggatgaattcaggccca
actgataacaggaatttccatggcatgcaccagggtcctggtggccctcacaacttccct
ccaccaatgccaaacatgggtggccctcctatgccgccaaaccccaatggaatgcctcca
ccctggatgcagccgccccctcctccaatgaaccaaggcccagcaccacctggacacccc
atgggcttattgccgccacccatgggtatgatgcccccgcctccacctcccccaaataac
caaccaccacctccaccctcaggacctctgccaccatggcaacagcaggcccctccccca
ccacccacgagcagcatggcaaccagcgctccactgccatggcagcaaaatacaacaacc
acatccacccctgcgactggaaacctgccaccctggcagcagccccagcagacagctgcc
tcagccgctcaacctcctcctccaatgggcaccccctctatggtgccgcctccacctggg
gtccaacccccgcttcctcctggtgcaccccctcctccaccaccccctccacctggttcg
gcaggcatgatgtatgcacctcctcccccacccccacccatggaccctaactttgtgacc
atgatggggatccccggtatgccaccttacgggatgccccctgcacctccaccgcctccc
ccgcagagctaa
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