Garra rufa (doctor fish): 141331372
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Entry
141331372 CDS
T11039
Symbol
tnrc6bb.1
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
grf Garra rufa (doctor fish)
Brite
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141331372 (tnrc6bb.1)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
141331372 (tnrc6bb.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
141331372
NCBI-ProteinID:
XP_073692508
LinkDB
All DBs
Position
1:complement(15204131..15221925)
Genome browser
AA seq
1535 aa
AA seq
DB search
MEDSHQKTEDSGHQEETEDSTKDLGSSLSATSLVTLTCASSRPSPAETTSPCPAVGGSSD
PPEGGNNAKRTAVANGQPPSTVSQRYMPREVPPRFRNQQEPKVLLKRGQPPLSCMLLGGG
NGGETVPQLPQQEQAETSDPTVDSVSPHLSSDASATPTYANYTWGLGSGRQPSAQGMDKD
DSDVEKWPRPEDSWNSDQTQHSARSRMDESDGLETDSSSQVSEYAEASMEGSASSQCENK
ESIKVNQHLNSKVSLLSGDQEGAQGLKPNYNLDDPDKEAPGRGLLNHTASEESSPTLLSP
ASAAYQTVCKNEERITGDWAELQAGPNRGGISTTKLWDTGEDPVGKISDALDGSSGEGTG
ISQGAWDGDSVGSNKQAATGWTSDLPGGASKENVREISEVSTDSLQDSSMLANSVASGDD
NQKAVDDWDGSEGESTGRESNEEGMHAPNLVQSPSRCQALHPEEPLQSMINQTNLDPKVL
CNTGWGKTQIKQNVAWDFEGDSGSVGWDVEVQAERSKEGWRDAGDLSNSKMQKQEVGQVG
GAKGWTGHGDTSVGIGHKGSGWGEDQEVENTCRREGKGWNQSGGSEWTPLPEGRGWNEEK
GGDHKNQDEGLWGSSEESGQRSSGWGGSSVKQHQGWGEKLLPSQIPNKQAALKTPNQQPQ
QQSQTQQQMPGYPTALQERGRPGETDDQNKGSGWTCGPIPQMPSVVEPSGWEEPSPQSIS
RKMEVDDGTSAWGDPSRYNSRAVNLWDKNSSQPQQQSSGRQAGAPSKPVPATWTRSSGPS
EPSMDSSSATWGKSFDGWGESSETGKGGGWGNSHSHSTKSGSKSMQEGWGDEGSNVSRHS
SWEEEEGGTVVWGSRGSQSNTYNSGGWGQGQGSRRINAKSPLKGNSGDSWTSSVNRQFSN
MSVTDEDSSMGHDSRHDRRGTNDGEMRRGGRTGGGFRPQTSKEMPSGETGPYIDKVGGHS
MFGGGGIPPLRGMHQAAVHPLNPSPGIRAQVPHQFLPPQVPGPMLKPMAPPSGGMFPPQL
SPQHIAMLGGIHPHMQQFQLACQLILQQQQQQQQQQQFLNQRKFPPPVRQQHDPQQLARI
MAILQQQQGVGGPKHSPPPPMGGHVPKHPDAHLHQLGMNAHKQPDGPVHSAMGGSEVHGK
APAAFTGPVKQVGGSSFSQYDVLGGSWHRSAGGKVDTPPANPTWPPEFQPGVPWKGVQSP
EPEPDPYMSPAGMLGPSVLSDTEHHLLQDNTGSNSLNTCMPSPGAWPYSASETPLTAHGT
AKYSELKSSWPPEPIGHGKSWRTNRNTSHLPRPPPGLSSQKQSQSWSGEGPWMPRAWGGG
ASGPESPFKSEWSDGGASAGKSWLLLRNLTPQIDGSTLRTICLQHGPLLTFHLGLTQGSA
LIRYCSPHEAAKAQSALHMCVLGNTTILAEFMSEEEVIRYFTHSQAAGVAGSPEGSPGSD
PAPREAERPVGTGADGEAAVGWQGLDVTTGPTVEAPGLALLSQWSNSAGEGAGKGVWGGV
ALGYHGSSLWGSPQLEDGTAGLLPGNLLGGGTDSL
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagtcaccaaaagacagaagacagcggtcatcaggaggaaactgaagacagc
acaaaagatttgggctcatctctatctgccacatcccttgtcacccttacctgtgcttca
tcacgacccagtcccgctgaaacaacctccccctgtcctgctgtcgggggttcatcggac
ccccctgagggagggaacaatgcaaagcggaccgctgtggccaacggacagcccccctcc
acggtgtcccagcgctacatgccccgtgaggtgcccccgcgcttccgcaaccaacaggaa
ccaaaagttctactgaaaaggggccaaccaccattgtcctgcatgctgctggggggcgga
aacggaggggaaaccgtgccccaacttccccaacaggagcaagctgagacctcagatcca
acagtagattcagtttctccgcacttatcgtcagacgcctctgccactcccacttatgca
aattacacatgggggttgggttcaggacgtcaaccctcggctcagggaatggacaaggac
gattctgatgtagagaaatggccaagaccggaagactcatggaatagtgatcagacccaa
cattctgccaggtcaaggatggatgagtctgacggcctggaaacggacagttcttctcaa
gtctctgaatatgcagaagccagtatggaaggaagtgcatcttcacagtgtgagaataaa
gaatccattaaagtcaatcaacacttaaattccaaggtgtcgctgctttctggagaccag
gagggcgctcaaggtctaaaaccaaactacaaccttgatgaccctgacaaagaagcccct
ggccgaggtctcttaaaccacactgcttctgaggaatcttctcccacactcttgagtcca
gccagtgcagcatatcagacagtctgcaagaacgaagagcgcattactggggattgggcg
gagcttcaggctggaccaaatcgtggtggaatctccactacgaaattatgggatacagga
gaagaccctgttggaaagatcagtgatgcattagatggaagttcaggtgaaggcactggc
atctctcagggagcgtgggacggagactcagtaggttcaaacaaacaggcagctacagga
tggacctcagacttgccaggtggagcatcaaaagagaatgtgagagagatctctgaggta
agcacagatagtttacaggactcttcaatgcttgcaaacagtgtggcatcaggagatgac
aatcagaaagcagttgatgattgggatgggtcagagggagaatcgactggtagagaaagc
aatgaggaagggatgcatgccccaaatctggtccaaagcccctccagatgtcaggccctt
cacccagaagaacccttacagagcatgatcaatcaaactaacctggatcctaaagtactt
tgcaatacaggatggggcaagacccagatcaagcagaacgttgcatgggattttgagggc
gacagtgggagtgttggctgggatgtagaagttcaggccgaacgcagtaaggagggctgg
cgggatgctggtgatctttccaactccaaaatgcagaagcaggaggttggccaggtgggt
ggagctaaagggtggactgggcatggagacacgagcgttgggattggtcacaaagggagt
ggttggggagaagaccaggaggttgaaaatacttgcaggagagaaggaaaagggtggaat
cagagtggtggaagtgagtggactccattacctgagggtcgaggctggaatgaagaaaaa
ggtggtgaccacaagaatcaagatgaaggtttatggggcagctcggaagagtcagggcag
cggagtagtggttggggaggcagcagtgtcaaacagcaccagggatggggcgagaagctt
cttccatcacagataccaaacaaacaagcagcacttaaaaccccaaatcaacaaccgcag
cagcaatcgcaaacccagcaacaaatgcctggatatccaacggctttgcaggaacggggt
cgtccgggagagaccgacgaccaaaataaaggttctggttggacctgtgggccaatccct
cagatgccttcagttgtagaaccaagtgggtgggaggaaccctcgccacagtctatcagc
cgaaagatggaagttgacgatggcacatctgcatggggcgatccgtcacgctacaacagc
agggccgtcaatctgtgggataagaacagctcacagccccaacagcagtcgtctggaaga
caggctggagctccatctaaaccggttcctgcgacgtggacacgcagcagtggtccatcc
gaaccgtctatggacagcagttcagctacttgggggaaatcattcgatggttggggagaa
tccagtgaaacaggaaaaggaggaggatggggaaactcacattcccattctaccaagtct
ggctcaaagtctatgcaagaggggtggggtgatgaaggctcgaatgtatcccgacactcc
agttgggaggaagaggagggtggcactgttgtttggggcagtcggggatctcaaagcaac
acatacaactctggaggctggggacaaggccaggggtccaggagaatcaacgctaagagc
cctcttaagggtaacagtggggactcgtggacatcttctgtgaatcggcagttctcaaat
atgagcgttacggatgaagactccagtatgggtcatgatagtaggcatgacaggagagga
acgaatgatggtgagatgcggagaggtggcaggactgggggaggattccgcccacagact
tctaaagaaatgccatccggagagaccggaccttatattgacaaggttggaggtcatagt
atgtttggcggtggtgggattcctccgttgagagggatgcatcaggctgctgtgcacccc
ttaaacccttcccctgggatacgagcacaagtgcctcatcagttcctgcctcctcaggtt
cctgggccgatgctaaagccaatggcgccccctagtggaggcatgttccctccacagctt
tccccccaacacattgccatgctcggtggcattcatccacacatgcaacagtttcagcta
gcctgtcagcttatattgcaacaacaacaacaacaacagcagcagcaacagtttctgaat
cagaggaagtttcctccccctgtaagacagcagcacgacccacagcagctggcacggatc
atggctatcttgcagcagcagcaaggtgttggtgggccgaaacactcgccgccgcccccc
atgggaggacacgtccccaaacacccagacgcgcatctccatcagctgggcatgaacgcc
cacaaacagccggatgggccagtgcattcagctatgggaggatctgaggtgcacggcaaa
gctcctgctgctttcacagggccggtcaagcaggttggcggctcctcgttctctcagtat
gatgtgttgggcggcagctggcacagaagcgcaggtggaaaagtcgacacgcctcctgcc
aaccccacctggcccccagagtttcagccgggtgtcccatggaagggcgtccagagccct
gagcctgagcctgacccctacatgagccctgcgggtatgctgggaccctctgtgctcagt
gatactgaacatcatctgctgcaagacaacacagggtcaaactctctgaacacctgtatg
ccttcacctggtgcctggccgtacagtgcctcagaaacgcccctcactgcacacggcacg
gctaaatactcggagctgaagtccagttggccgccggagcccattggacatggcaaatca
tggcggaccaatcgaaacacttctcacctgccccgcccccctccgggtctctccagtcag
aagcagtcccagtcgtggtcaggagaggggccttggatgcccagggcatgggggggcgga
gccagcggcccggagtcaccctttaaatcagagtggagcgatggaggagcttcagcggga
aaatcatggctgttgctgcgaaacctcacgccacagattgacggctcgaccctgaggacg
atctgtctgcagcatggccctttgctgacctttcacctcggcctgacacagggcagtgct
ctgattcgctactgcagccctcatgaagctgccaaagcccagagcgccctgcatatgtgt
gttttgggaaacaccaccatcctggccgagttcatgagcgaggaggaggtcatccgttac
ttcacacattcccaggccgcaggggttgcggggtcacctgagggctcgcctggctctgac
cccgccccacgagaggctgagcggcccgtgggcaccggggcggacggagaggcggcagtg
ggctggcaggggctggacgtgacaaccggccccacggtggaagcgccaggactcgccctc
ctcagccaatggagcaacagcgcaggggaaggggcggggaaaggggtatgggggggcgta
gctcttggttaccacggcagcagcctatggggctctcctcagttagaggacggcacagcc
gggttgttgccaggcaacttgctaggaggcgggacggacagtttgtga
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integrated database retrieval system
