Garra rufa (doctor fish): 141331573
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Entry
141331573 CDS
T11039
Symbol
rnf111
Name
(RefSeq) E3 ubiquitin-protein ligase Arkadia
KO
K10635
E3 ubiquitin-protein ligase Arkadia [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141331573 (rnf111)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141331573 (rnf111)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141331573 (rnf111)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF111_N
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-C3HC4
zf-C3HC4_3
zf-RING_5
zf-RING_UBOX
zf-ANAPC11
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
141331573
NCBI-ProteinID:
XP_073692720
LinkDB
All DBs
Position
3:43046313..43106484
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AA seq
951 aa
AA seq
DB search
MKSEIPSDARRKQEPLKGPLSNPEPMETAKSFAEMEVIGKAGSDFPSPLCPETRHRPSRD
AGGRRDCERGLSGRKKRKSQQPGPSYCSLKEAPVSEAALTPPHHRPVLLETHSEDERNPE
SSLSDCASSPSSSLRFGDSDTLSSEEDGRLMTVRQQQLKAPGSASTGSAGGGTGTAVGMR
PLVARTRASRSHKWPRLEPESNHVKRPCLSSRRPLHRKRFVKGGAGGGAQRTPKQKERLL
LQRKKREVIARKKYALLHSTSSSSEELTSDSSSPSSTEAEDELYVDVSSSSSQASTAAVA
SGVLDEDVVVIEATPAPAVPASEEINVTSTDSEVEIVTVGDAFRPRSVGSHGRMHWGPSC
SQSRAQEGRGRHRLSTVIQPLRQSAGEVVDLTVDEDDLSVVPTTSDSTHPQLVSSSSSSS
SHNACTSESPPEGPGPSSSCLAAAPDSTLVAQSHGGVPGTNTTATEDDSRRSMSGENGGV
AMPRLPSCCPQHSPCSGPSSGHLSMGHTHSGCMQGGTTQQSGPQQSGSQHSHGHSHHFHH
HHHTTPVPSSLAFPESSCPLERPTAMPAPCGGVSSSNQYHDQVQWYGPLPRPLHHQSSSS
CPHSHSNAPPPQQPPPQGDYVIPHPVLPFHTPLPSHAPGHSVPPAPPPSLPSHHLPGSSA
PLSQHLPPEHQALQHHLPVLGPNPVQRLHQHDILQRMEVQRRRMMQHPTRAHERPPPHPH
RMHPNYGHGHHIHVPQTMSSHPRQADQRTTWELGIEAGVTVAPYPSGHLHPHLPHYHPPP
RLHHFPIQLMHTGSMPEVTYPHIRYISSRMTFGRTYEDLLHLEERLGTVNRGASQGTIER
CTYPHKYKKKVVERDTEEQLAPEAWASVGKNMHSTSNSRKLHGKQEEEEGAEEDTEEKCT
ICLSILEEGEDVRRLPCMHLFHQLCVDQWLLTNKKCPICRVDIEAQLSPES
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtgagattccgtctgatgcacgacgtaagcaggagcccctgaaggggcctctg
tctaaccccgaacccatggagacggctaagagcttcgctgagatggaggtgattggcaag
gcaggaagtgatttcccttctccgctatgtcccgagaccagacaccgaccatcacgagat
gctggaggtcgcagagactgtgaacgaggcttgtcgggacgcaaaaagcgcaagagccag
cagcctggtccatcgtattgttctctgaaggaagcgccagtgagtgaggcagccctcact
ccgccccaccacaggcctgtgctgctagagacacatagtgaggacgaaagaaacccagaa
tcctcattgagtgactgtgcctcttcgccctcctccagccttcggtttggtgactcggac
actcttagctcagaggaggacggcaggctgatgacagttagacagcagcaacttaaggct
cctggttcggcctccaccggcagtgctggaggcgggacgggcacggcggtaggtatgcgc
ccgctagtcgcccggactcgtgctagcaggtcgcataagtggccgcgacttgagccagaa
agcaatcatgtgaaacgtccgtgtctcagctcacgcagaccattgcacaggaaacgtttt
gtgaagggcggggcaggaggtggggcacagcggactccaaaacagaaggagcgattactg
ctgcagaggaagaaacgtgaggtgatcgcacggaagaagtacgccctcctgcatagtacc
agcagctccagtgaggagctgacctctgactcctcctccccttcctctactgaggcagag
gatgagctgtacgtggatgttagcagcagtagcagccaagccagcactgcggctgtggcc
tcaggtgtcctggatgaggatgtggttgtgatcgaagcgactcctgcacctgcagtgcct
gccagcgaggagatcaacgtgacctccacggacagtgaagtggagatcgtaactgttgga
gatgccttcaggccacgctcggtgggaagccatggcaggatgcactggggacccagctgt
tcccagagccgagctcaggagggacgtggccgccatcgcctgtccaccgtcatccagcca
ctcagacagagcgctggagaagtggtggacctcaccgtggatgaggatgacctctcagtc
gtgccaaccacttctgacagcacacacccacagctggtcagttcttcttcctcttcctct
tcccataatgcctgtacctcagaatcgccaccggagggtcctggtccctccagtagctgc
ttagcggccgcccctgatagcacactggttgctcagagccacggtggagttccaggaacc
aacaccactgccaccgaagatgacagcagaaggagcatgtctggtgagaatggaggtgtg
gcgatgcccaggttaccttcttgttgcccccagcactccccttgcagcgggccatcttca
ggacacctctccatggggcacacccactcagggtgtatgcagggtgggacgacacagcag
tctggtccccagcagtccggctcccagcactcccacggtcactcgcatcacttccatcat
caccaccacaccaccccagtcccttcttccttagccttcccagagtccagctgccctctg
gagaggcccactgccatgcctgcaccctgtggaggggtgagcagcagcaaccagtaccac
gaccaggtacagtggtacggccctcttccacgccccctgcaccaccagtcgtcctcatcc
tgtcctcactcccacagcaatgctcctccccctcaacagcctcctccacagggtgactat
gtcatcccacaccccgtcctccccttccacaccccactgccttctcacgccccgggccac
tcggtgcccccagctcctccaccctccctgccttcccatcatctaccaggctccagtgcc
cctctgtcgcagcatcttccccctgagcaccaggctctgcagcaccacctgcccgtactt
ggcccaaaccctgtccagaggctccaccagcatgacatattgcagagaatggaggttcag
agacgcagaatgatgcagcacccgacgcgagcacatgagagaccaccgccgcatccccat
agaatgcaccctaactacggtcatggacatcacattcacgtccctcaaactatgtcatcg
catcctcggcaggctgaccagaggaccacatgggagctgggcatcgaggctggtgttact
gtagctccctacccttcaggacaccttcacccacatctgcctcactatcaccctccaccc
agactgcaccatttccccatccagctgatgcacactggctcaatgcctgaggtgacatat
ccacatattcgctacatctcctccagaatgacgtttggccgcacatatgaggatctgctg
catttagaagagcgactggggactgtgaaccgaggggcctctcagggaaccatagagagg
tgcacctacccacacaaatacaaaaagaaggtggtggagagagacactgaggaacagtta
gcacctgaagcatgggcatctgttgggaaaaatatgcactcaacctcaaactcgagaaag
ctgcatggtaagcaagaggaagaagagggtgcggaggaagacacagaggagaaatgcacc
atctgtctgtctatactggaggaaggggaggatgtcaggcgccttccatgtatgcacctc
ttccatcaactgtgtgtagaccaatggctcctcactaacaagaaatgccccatctgcaga
gtggacatcgaggctcagttatctccagagagttga
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