Garra rufa (doctor fish): 141331617
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Entry
141331617 CDS
T11039
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM35-like
KO
K12012
tripartite motif-containing protein 35
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141331617
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
141331617
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-Nse
U-box
SPRY
zf-RING_5
Prok-RING_4
zf-RING_6
Baculo_PEP_C
Fib_alpha
DUF4200
zf-ANAPC11
UPF0242
zf-RING_10
Tweety
Histidinol_dh
DUF1664
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
141331617
NCBI-ProteinID:
XP_073692768
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Position
1:17018161..17038720
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AA seq
452 aa
AA seq
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MASINVSAEELSCPVCCEIFKDPVLLLCSHSFCKECLQQFWRTKETQECPVCRRRSSRDD
PPCNRVLKNLCESFLKERNERHLSGSEEICSLHSEKLKLFCLEDKQPVCLVCRDSQQHDN
HKFRPISEVVSSYKEELNISLKSLQEKLQHNKNTKGEFEKTVQHIKSQAVQTERQIKQQF
EKLHQFLRDEEKATITALREEEEQKKQMMKEKLEEINRHISALSHTIKDTEEMMKDNDVC
FLKKFPVSMERVQISQPDPQTPSGALIHVPRYLGNLPFRVWKKMQDIVQNTPVILDPNTA
HPCLALSDDLTSVRNSENNELLPDNPERFDIFNCVLGSEGFNSGTHCWDVEFKGSQNWTL
GVTTASNQRKGPDFFSTDVWSVTYGWSEWAGFRVKQDLKRVRIDLDCDGGTVSFSDPVTN
THLHTFTTTFTDTVFPFFNSVYLLRILPFNSQ
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaataaatgtatctgcagaagaactttcttgtcctgtgtgctgtgaaatcttc
aaagatcctgttcttttattgtgtagtcacagtttctgtaaagagtgtcttcaacagttc
tggagaaccaaggaaactcaggagtgtcctgtctgcaggagaagatcctcaagagatgat
cctccatgtaatcgtgtgttaaaaaacttgtgtgagtcgttcctgaaagagagaaatgag
aggcatttatcaggatcagaggagatctgcagtttacacagtgagaaactcaaactcttc
tgtctggaggacaaacagccggtgtgtttagtgtgcagagattcacaacaacatgacaat
cacaaattcagacccatcagtgaagtggtttcatcatacaaggaggagctcaatatatca
cttaagtccttacaagagaaacttcaacacaataaaaacactaaaggagagtttgagaaa
acagttcaacacatcaagtctcaggctgtgcagacagagcgtcagattaaacagcagttt
gagaagcttcatcagtttctcagagatgaagaaaaagctacaatcactgcactgagggag
gaagaggagcagaagaagcagatgatgaaggagaagctggaggagatcaacagacacatc
tcagctctttcacacacaatcaaagacacagaggagatgatgaaagacaatgatgtctgc
tttctaaagaagtttccagtctcaatggaaagagtccagatctcacagccagatccacag
acgccttctggagctttgattcatgtgccacgttacttgggcaacctgccgttcagagtc
tggaagaagatgcaggacattgtccaaaacactcctgtgattctggatccaaacacagct
catccatgtctcgccctgtctgatgatctgaccagtgtgagaaacagtgagaacaatgaa
ctgcttcctgataatccagagagatttgacatttttaactgtgttctgggttcagagggt
tttaactcaggaacacactgctgggatgtggagtttaaaggaagtcaaaactggactctt
ggagtaactacagcatcaaaccagagaaagggacctgatttctttagcactgatgtctgg
agcgtaacatacggatggtctgaatgggctggttttcgtgttaaacaggatcttaagcgt
gtgagaattgatctggactgtgacggaggaacggtgtcattctctgatcctgtaactaac
acacatctacacacattcacaaccaccttcactgacactgtctttcctttctttaatagt
gtttatcttctgaggatcttaccgttcaatagtcagtaa
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