Garra rufa (doctor fish): 141331806
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Entry
141331806 CDS
T11039
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141331806
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
141331806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_19
TPR_16
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_10
TPR_17
TPR_11
TPR_7
ARM_TT21_5th
TPR_6
TPR_Slam
ARM_TT21_4th
ANAPC3
ARM_TT21_C
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
141331806
NCBI-ProteinID:
XP_073692941
LinkDB
All DBs
Position
3:9236913..9259038
Genome browser
AA seq
1165 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDTKKDLINQSTLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFQFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALELNSKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKEHLKKVTVQYSDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYFREARDVFAQVREATAEISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKYQNTEVL
LYLARALFKCGKLQECKQTLLRARHVAPSDTVLLFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLSKAGDKMRFDLALAASEARQCSDLLSQAQYHVARARKQDEEEKE
HRAKQEQERDQLRQQMMKEQEERKSKVAEEQKKLLEQRAQYVEKTKNLLNFSEAMKVSAK
DKKKSSSGRRKKGGDFDDFVNDDSDEDLPLRKKKKKKSGSGSEVEEEGEDGEKKPRKKRR
RPAKREDEGSDDEEGGSRPKKQRKPRERKRIEKAKPERMPPSLKGKIKSKAIISSSDSSS
DEDGLKIAEDRNPKDSGSGSDDDNENEGHRKRIVSDSDSNEERNRSGSEAGSPQRSGNSD
EDESGSERPVKRRRPQQQSDSEQSDNESKKSRSEGSDDESQRGSPAAASDRGSENEGSPQ
RSDNESEPEGSNNEASNRGSDDDSD
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggatccattgaaatccctctgcgggacacagatgaggttattgagcttgac
tttgaccagcttccagaaggagatgaagtcatcagtatcctcaaacaggaacacacacag
ctgcacatatggattgcacttgctttggagtactacaaacagggcaagacagaagatttt
gtcaagttgctggaggcggcgcgcattgatggaaacctcgattacagagaccacgagaag
gaccagatgacctgtttggacacactagcagcttattatgtccagcaggcgagaaaagag
aagaacaaggatacaaagaaggacctcatcaaccagtccactcttctgtacaccatggca
gacaagatcatcatgtatgatcagaaccatctgctgggaagagcttgcttttgtctcctg
gaaggagataaaatggatcaggcggatgctcagtttcagtttgtgcttaaccagtcaaca
aacaacatccctgcactcctgggtaaggcatgcatctccttcaacaaaaaggattacaga
ggagctctagcctactacaaaaaagctcttcgtacaaaccctggatgtccagccgaggtg
agactaggcatgggccactgctttgtcaagctaaacaaactggagaaagctcgtttggca
tttggcagagctcttgagctcaactccaaatgtgtgggagctttggtgggtttggcagtg
cttgagctcaacaacaaagaggctgactccatcaagaacggtgtgcagctgctttccaga
gcctacaccattgaccccagtaaccctatggtgctcaatcacctcgccaaccatttcttc
ttcaaaaaggactacagcaaagtgcagcatctggctcttcatgcttttcacaacacagaa
gtggaggctatgcaagcagagagctgctatcagttagctcgttcctttcacgtccaggag
gactatgaccaggccttccagtactactatcaggccactcagtttgcatcgtctactttt
gtactgcccttctttggcctgggccagatgtatgtatatcgtagagacaaagagaatgct
gcgcagtgctttgaaaaggttctgaaggcttatcccaacaattatgaaaccatgaaaatc
cttgggtcactttacgccacttcagatgaccaggagaagagagacattgctaaagaacat
ctgaaaaaagtcacagtacaatattcagatgacgtggaagcctggattgagctcgcccaa
attctggagcaaacagacattcagggtgctctttctgcatatggcactgccacacgtatc
ctccaggagaaggtccaagctgatgttcctcccgagatcctcaataatttgggagcttta
catttcagattgggaaaccttggcgaggccaagaaatacttcctggcttctttggagagg
gcaaaagctgagggcgagcatgatgagcactactacaacgccatctccgtcacaacctcc
tacaacctggccagactctatgaagccatgtgcgagtttcacgaggctgagaaactctac
aagaacatcttgagagagcatcccaactatgtggactgttatttgcgtcttggagcgatg
gcacgtgacaagggaaatttctatgaagcttctgactggtttaaagaagctcttcagatc
aatcaggaccaccctgatgcctggtctctgattggtaaccttcacttggcaaaacaagag
tggggtcccgggcagaagaagtttgaacgcatccttaagcagccgtccactcagaacgac
acctactctatgctggcactgggcaacgtgtggctacaaacacttcatcagcccactaga
gacagagaaaaggaaaagcgtcaccaggatcgagctttggcaatctacaaacaagttctg
aggaatgattccaaaaatctatatgctgctaatggcataggtgctgtgttggcacataag
ggttatttccgagaggcacgggatgtttttgcccaggtccgagaggcaacagcagagatc
agtgatgtctggttgaatctcgcacacatctatgtggagcagaagcagtacatcagtgct
gtgcagatgtatgaaaactgcttgaagaaattctacaaataccagaacacagaggtgctg
ctgtatctggcccgagcgctcttcaaatgtggcaagctgcaggagtgcaaacagactctt
ctgagggctcggcacgtagctcccagtgacacagtgctgctgtttaatgtggcgctggtg
ctgcagaggttggccacgctggtgctaaaggatgagaagagtaatctgaaggctgtattg
agtgcagtgaaagagctggagttggctcacaggtacttcagctatctcagtaaggctgga
gacaaaatgagattcgacctagcgctggccgcaagcgaagccaggcagtgctctgatttg
ctaagccaggctcaataccatgtggctcgagctcgtaagcaagatgaggaggagaaggag
caccgtgccaaacaggagcaagagagagaccaactgcggcagcagatgatgaaagaacag
gaggagaggaagagcaaagtggccgaggagcagaagaagctgcttgagcagagagcccaa
tatgtggagaagaccaagaacctgctcaacttctcagaggcaatgaaagtatcagcaaag
gacaagaagaaatcaagcagtggacggcgcaagaaaggaggcgactttgatgactttgtc
aatgacgactctgatgaggatctgccactcagaaagaagaagaagaagaaatctgggagt
ggcagtgaagttgaggaagaaggggaggatggagagaagaaaccccgtaaaaagaggagg
agaccagctaaaagagaagatgaaggttcagatgatgaggaaggaggctcaaggcctaaa
aagcagcgcaagcccagagaacgcaagaggatcgagaaggccaagccagagcgcatgccg
ccgtctcttaaagggaagatcaagtccaaggcaatcatttcatcctctgattcctcctcc
gacgaggatggcctgaaaatagcagaagacagaaaccccaaggacagcggctctggttca
gacgacgacaacgaaaatgaagggcacaggaaacgtattgtttctgacagcgattccaac
gaggagcgtaacaggtcgggcagtgaggccggcagcccccagcgctctggaaactcagat
gaggatgagtctggcagcgaacgcccggtgaaaagacgaagaccacaacaacagtccgac
tctgagcagtcagacaacgagagcaaaaagagccgctctgaagggtctgacgatgaatct
cagcgcggatctccagccgccgcttcagaccgaggctcagagaacgaaggctctccgcag
aggtccgataacgaatctgagccagaggggtccaacaatgaagcctccaacagaggatct
gatgatgacagtgactaa
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