Garra rufa (doctor fish): 141331895
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Entry
141331895 CDS
T11039
Symbol
shha
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
grf Garra rufa (doctor fish)
Pathway
grf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
141331895 (shha)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
grf01002
]
141331895 (shha)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141331895 (shha)
Peptidases and inhibitors [BR:
grf01002
]
Cysteine peptidases
Family C46: hedgehog family
141331895 (shha)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Morphogens
141331895 (shha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
DHQS
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
141331895
NCBI-ProteinID:
XP_073693039
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Position
3:complement(29865065..29872636)
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AA seq
418 aa
AA seq
DB search
MRLLTRVLLVSLLSLSLVVSGLACGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGASG
RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQWPGV
KLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKAH
IHCSVKAENSVAAKSGGCFPGSALVTLKDGGQKAVKDLNPGDKVLAADSDGNLVYSDFMM
FTDRDSATRRVFYVLETKEPVEKITLTAAHLLFVLDNSTDDLHSMTAAFASSVRAGQKVM
VVDDSGQLKSVIVERIYTEEHQGSFAPVTAHGTIVVDRILASCYAVIEDQSLAHLAFAPV
RLYYGVSSALFPKNFISQTNATLQQEGVHWYSKLLYQMGTWLLDSHLLHPLGMSVNSS
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttctgacgagagtgctgctggtgtctcttctcagtctgtccttggtggtgtcc
ggactggcctgcggtcctggcagaggctacggcagaagaagacatccgaagaagctgaca
cctctcgcctacaagcagttcatacctaatgtggcggagaagaccttaggggccagcggc
agatacgagggcaagataacgcgcaattcggagagatttaaagaacttactcccaattac
aatcccgacattatctttaaggatgaggagaacacgggcgcggacagactcatgacacag
agatgcaaagacaagctgaactcactagccatctctgtaatgaaccagtggccaggggtt
aagctgcgtgtgacagagggctgggatgaggacggtcaccattttgaagaatcactccac
tacgagggaagagctgttgatatcaccacctctgatcgagacaagagcaaatacgggaca
ctctctcggttagctgtggaagctggatttgattgggtctattatgagtccaaagcccac
atccattgctctgtcaaagcagaaaattcggttgccgcgaaatctggaggctgcttccca
ggttcggctctggtcacgctcaaagacggaggacagaaggccgtgaaggacctaaacccg
ggtgacaaggtgctagcggcggacagcgatgggaacctcgtgtacagcgacttcatgatg
ttcacagaccgagactccgcgacgcgacgtgtgttttacgtcctagaaacgaaagaaccc
gttgaaaagatcacactcaccgctgctcatctcctttttgtcctcgacaactcaacggat
gatctccacagcatgaccgccgcgtttgccagcagtgtcagagccggacaaaaggtgatg
gttgttgatgatagcggtcagcttaaatctgtcatcgtggaacggatatacacggaggag
caccagggctcgttcgcaccagtgactgctcatggaaccattgtggtcgacagaatactg
gcgtcctgttacgccgtcatagaggaccagagtctggcgcatttggccttcgcgcccgtc
aggctctattatggcgtgtcatcggccctgttccccaaaaacttcatcagtcaaaccaat
gcgactttacaacaggagggagtccactggtactccaagctcctgtatcaaatgggaacg
tggcttttggacagccacctgcttcatcctttggggatgtcagtaaactcgagctga
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