Garra rufa (doctor fish): 141333102
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Entry
141333102 CDS
T11039
Symbol
ngs
Name
(RefSeq) notochord granular surface
KO
K07610
desmin
Organism
grf Garra rufa (doctor fish)
Pathway
grf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
141333102 (ngs)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
grf04812
]
141333102 (ngs)
Cytoskeleton proteins [BR:
grf04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
141333102 (ngs)
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Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF848
DUF3450
Fib_alpha
Cwp8_D3
DUF1664
Motif
Other DBs
NCBI-GeneID:
141333102
NCBI-ProteinID:
XP_073694132
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Position
4:7706442..7713075
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AA seq
520 aa
AA seq
DB search
MSHSPERISSYRRHFEGGMSSSSTLQVRVSSPSPNRGAARHRSASYSRSGARRALSGSRK
SRMTSSVSMGTLCLGMGFGVAGGALDLDAAAAENQAFLSTRSSERKEMVALNDRLAVYIE
KVRSLEQSNKLLEAEIDGIKSHHVKPSGLRLLYEDQLRELRRIADQMKVQRDLAVAAKDA
MAGQLEMLKVKYEEAVEARKKAELEIEAFKPDVDAATSARIALEKRLENLEVELEFLQRI
HKKEIEELMAQIYGSVAKVDVAFSLPDLASALKQIQAQYDSIAAQNLQEMDAWYKAKFQD
LNKATSRHVETARSVREEITAYKREIQNKQRELDALKNRNEALLLQMREAQERYKKEEEE
LQIRITTLKEELKSIKGKIALLLREYQDLLNVKMSLEIEITAYRKLIEGEDSRLSNMVSS
LSLMSVSAGTVSSISGAAAARGHAISGSVSSSASEKMLSSSTIVDHNHHESVEEFTHEQA
VEMTERKTVLIRTVKTDEDTYQRDTQERTITISGAADEND
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacagcccagaaaggatttcatcttatcgccgtcacttcgagggcggcatgagc
tcctcttccacgcttcaggtgcgggtctccagcccttcgcccaaccgtggagccgcccgc
caccgctccgccagttacagccgcagcggggcacgcagggcgctttccggatcccgcaaa
tcacgcatgaccagcagtgtgagtatgggaacgctgtgtctgggcatgggttttggggta
gcaggcggtgcgctggatctggacgctgcagccgctgagaaccaggctttcctcagcaca
cgctccagcgagagaaaggagatggtcgccctcaatgaccgcctggctgtatacatcgag
aaggtgcgttctctggagcagagcaacaagctgctggaggcagaaattgatggcatcaag
agccaccatgtgaagccgtccggtctgcgactgctgtatgaagaccagctgagggagctg
aggaggatcgctgaccagatgaaggtccaacgggacctggcagtagcagcaaaggatgcc
atggcaggtcagctggaaatgttgaaggtgaaatatgaggaggctgtggaggccaggaaa
aaggcagagcttgaaattgaagccttcaaaccggatgtggatgcagctacatctgcccga
attgccttggaaaaacgactggaaaacctggaagtggagcttgagttcctgcaaaggatt
cacaaaaaggaaatcgaggagctgatggctcagatttatggatctgttgctaaagtagac
gtggccttctctttgcccgatctggcatccgctctcaaacagatccaggcccaatatgac
agtattgccgcccaaaacctgcaggagatggacgcatggtataaagcgaagtttcaagat
ctaaacaaagcaacatcacggcatgtggaaacagcgaggagcgtcagggaggaaatcaca
gcttacaaaagagagattcagaataaacagagagaactggacgctcttaaaaacagaaat
gaagcactgctgctacagatgcgagaagcccaggagagatacaagaaagaggaggaggag
ctacagatccgcatcacaactctaaaggaggaactgaagtctattaaggggaagattgca
cttctactgagagaatatcaggatctgcttaacgttaagatgtcgctggagattgaaatc
actgcatacaggaagctgatagagggagaagacagtcgcttgtccaatatggtgagcagt
ctgtctctcatgagtgtgagcgcaggaacggtcagcagcatttccggtgcggcagcagcc
cgcggtcatgcgatcagtggatcggtgagctcatctgcctctgagaagatgctctccagc
agcacaatagtcgaccacaaccatcacgagtctgtggaggagttcactcacgagcaggct
gtggagatgacggagagaaagaccgtcctcattagaacagttaagacagatgaggacacg
tatcaacgggacacacaagaacgtaccatcactatctctggtgccgcagatgagaatgat
tga
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