Garra rufa (doctor fish): 141333264
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Entry
141333264 CDS
T11039
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141333264 (pdzrn4)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141333264 (pdzrn4)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
141333264 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
141333264
NCBI-ProteinID:
XP_073694339
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All DBs
Position
4:15707143..15752528
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AA seq
798 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGREFSKSGHEGTVEAMRKDPIVVQVLKRGTSARNQ
TSLQEVCVVDVCTQTDITFEHIMALAKMRPTTPPVPDICPFLLSDSCHSIPTMEHEYFDC
PEYVGSTQAEVDRAVEFECEEIELCRMNSQEKLGLTLCYRTDDEEDTGIFVGQVELNSIA
ARDGRIREGDRILQINGHDVQNREEAVALLSNENSRSIVLLVTRPEGQMDGSWLDEDHQD
FLEELKMEILEEQKKEGILQTAGCVKRSKIHEDASASTDTATCSSSILEKDSGVKCSFED
SSEHELLSHPQARTQKQLRDRWEAGSHLVPMDTVSLRQEKGQEGRLSENGVEYDHFQQLL
ELKCQIRNSGECGLVYRRSSTIECSLTEQGGSGVARELHMLNEELRSIELECQSIMQAHQ
LRRSKHDSPRTDKESRLRRGKLADINEHPERLQSEKLRDKDSSSAYNTAESSRSTPLGTE
GSPDHSLQRRVHLTNQRNLRSTQHLQSPYSSPILSLPSQSSPTCSRAHTYTSSTPPLQTP
ITSPGSQGPSQAFSSSLEQSPSNPSESDPALPADDERCEKERNRSRIATAQHYHSPYHSN
TTATQPPSTRHYQSYLQLLQQHSSSSLEYSQSQLSLLSLRGRPGPSPPGRLEWKVKVRAD
GTRYVARRPARDRILRERALRIREERSGGMTTDDDAVSELKMGRYWSKEERKQQLARARE
QRRRREFMQRSRLECLRETMGTASGEVSILELSHKKMLKKRNKKILDNWMTIQELMSHGA
REPEGTKVHNAFLSVTTV
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaacctgtgcacgctgcagaagagagaggagcactacaagctgctgtatgag
atcgcacaggtgaatggccgtgaattttccaagtctggtcatgagggaacggtggaggcc
atgaggaaggatcccatcgtggtgcaggtgttgaagcgaggaacctcggcccggaaccag
accagtctacaggaagtgtgtgtggtggacgtgtgcactcagacggacatcacctttgag
cacatcatggctctggctaagatgagacccaccaccccacctgtgccagacatctgcccc
ttcctgctgtcggacagttgtcattccattccgaccatggagcatgaatattttgattgt
cccgaatatgtgggcagcactcaggcagaggtggacagggcagttgaattcgagtgtgag
gagattgaactctgtcgaatgaacagccaggaaaagctgggtcttactctctgttaccgc
acggatgatgaggaagatacaggcatttttgttggacaggtcgagctcaacagcatagct
gcgagggatggacgcatcagagagggagaccgaattttacagataaatggtcatgacgtg
cagaacagggaagaggctgtcgctctgctctcaaatgaaaattccagatccatagtgtta
cttgtcaccagacctgaaggacagatggatgggagctggcttgatgaggaccatcaagat
ttcctagaggagctgaagatggagattttagaagagcagaaaaaggagggaattcttcaa
acagcaggttgcgtaaagcggtctaaaatacatgaagatgcctcagcaagtacagataca
gcaacatgttcctcttccattctggaaaaggacagtggtgtgaaatgcagctttgaggac
agctcagaacacgaactgctctctcatccccaagcacggactcaaaaacaacttcgggac
aggtgggaagcgggctcgcatttggttcctatggacaccgttagcttaaggcaggagaag
ggtcaagagggcaggttgagtgagaatggagtggagtatgaccatttccagcaactcctg
gagcttaagtgccagatacgtaatagtggtgaatgtgggttggtctacaggcgaagcagt
actatcgagtgcagcctgacggagcagggtggaagcggcgtggcacgggagctgcatatg
ctcaacgaagagttgcgcagcattgaacttgagtgccagagcatcatgcaagcccatcag
ctgcgcaggagcaagcacgactctcctcgaacggataaggaaagtagactgcgtcgtggc
aagcttgcggatatcaacgagcatcctgagagactacaaagtgagaagctcagagataaa
gacagctctagtgcctacaatacagccgaaagttcccgctcaactccactgggaacagaa
ggttcaccagatcactctctacagcgtcgagtccacctgaccaatcaaaggaaccttcgg
agtacccaacatttgcagagtccctacagtagtcccatcttgtctttacccagccaaagt
agccctacttgcagtcgtgcccatacgtacaccagctccacaccacccttacagacccct
atcaccagtcctggttcacaaggaccaagccaggccttctccagcagcttggagcaaagc
cccagcaacccttcagaatcagacccagcgcttccagcagatgatgaacgctgtgagaaa
gaaagaaaccggagtaggattgcaaccgctcagcactaccattcaccctaccatagtaac
accacagcaactcagcctcccagcacacgccactaccagagttacctacagctcctacaa
caacattcctcttcctctcttgagtactcccagagccagcttagcctcctcagcctccgt
ggacggcctggaccttctccacctgggcgacttgagtggaaggtcaaagtgcgagcagat
ggaaccaggtacgtggcacgtcggcccgcacgagaccgcattctgcgcgaacgagcctta
cggattcgggaggaacgcagcggtgggatgactacagatgacgacgcagtcagtgagttg
aagatgggacggtactggagtaaagaggaacgcaagcagcagctagcgcgggccagggaa
cagcggcgcaggagggagttcatgcagagaagccggcttgagtgcctcagggagacaatg
gggacggcaagcggtgaggtcagcatcctggagctcagccataagaagatgctgaagaaa
cgaaacaagaagatccttgacaactggatgactattcaagagctcatgagccatggagca
cgagaacctgagggcaccaaagttcacaatgccttcctttcagtcaccacggtttag
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