Garra rufa (doctor fish): 141333271
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Entry
141333271 CDS
T11039
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141333271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141333271
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141333271
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141333271
mRNA degradation factors
3'-5' decay
Ski complex
141333271
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
141333271
NCBI-ProteinID:
XP_073694347
LinkDB
All DBs
Position
4:complement(1036563..1075463)
Genome browser
AA seq
1250 aa
AA seq
DB search
MDKIDLPPVGPDDLPLSLLEMGCSGRFELITHPLPQNRPLPPNSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHDVDDAFHKFLKISTRDKEVDSLLHCSLSPLHSGLSVVRDPTTGML
LDFTEVLLEDTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSEL
EEDIDFEKDLLTVPPGLKAGMDFSDKEAKTTKSEVNLLSLLSTFDDVIDALPEEKEVSQK
EETVKLPRTNSLEDLGIKDSGNSSSQPSANKVSLTEQKKKLQQEDKGDNKKWAVPVDISS
PCGDFYKRIPNPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQK
HMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNGS
EVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIK
KRHIYVISTVKRPVPLEHYLYTGNSTKTQKELFLLMDSTGNFLTKGYYAAVDARKERTSK
HAQSFGTKNVSQHNTTASQDRAIWQTLLNFLSQRQQTPVVAFTFSRTRCDENARSLTSLD
LTSSIEKNEIHSFLQKSLTRLRGGDRQLPQIRLMRDLLKRGIGVHHSGILPILKEIIEML
FSKGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD
ATGTVIILCKAGVHDMGDLHAMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF
SENHRDTQAHEKRISELRNTLSSLPPLDTEGQLSDLLSYYHTITELRITTEALQRAVLES
VNGLKALSVGRVVIVNNSHHHNALGVILQVSNDAVNRTLTALIICEKGNEEAAGDDLTNK
VLHPIYSTTLFIPEGPCSHTVQKLKLQDISAITAKTLKVIPERIIDNYNKRQQPRFRLDP
PGQAISTATQELLRLAEANPNGIATLDAVNDLHLKGVDVVEGVMRQRVLQDSLKDFHCIH
SPTFIEQFARVQERMSVQEELDKLLFLISDQSLTLLPEYHQRIKVLEALQYVDSTGAVQL
KGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIDPHITNTLQEGIN
QVLNVAQHIGDLQRECGIAQTAEDFVAQFKFGLTEVVYCWARGMPFAEIAELTDVQEGTI
VRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatagatttgcccccagtgggtcctgatgatttgcccctgtctctgctggag
atgggctgctcagggagatttgaactcatcacacacccactgcctcaaaacagacccctg
cctccaaacagcacgcttcctcatgggctccctcctacttgtctggatctaaaaacagaa
gtagaaaagcgttttctccgagatcctgcttggctcccggtacacgatgtagatgatgcc
ttccacaagttccttaagataagtacacgggacaaagaggtggactctctcctgcactgc
tcactgtctccactgcactctggcctgtctgtggtcagagatcccaccaccggtatgctg
ctggatttcactgaggtgttattagaggacacaggattgtctgccaaaaattctctgtca
ttacaaagacagcctggacctccgtccgagagcctcagagggagtaacacaaactatcca
tttctgccaggtggaatggaagaactgacattagagcagattaagaaaaagtcagagctg
gaagaagacattgactttgagaaagatttgttgactgttcctcctgggctgaaggctggt
atggacttcagtgacaaagaagccaaaaccacgaagagtgaggtgaacctgctgtccctc
ctgtcgacctttgacgatgtcattgatgctctgccagaggagaaagaagtctcacaaaaa
gaggagactgtaaaacttcccagaactaacagcttggaggacctgggaattaaagattcg
ggtaactcttcttctcagccttcagcgaacaaggtaagtctgactgaacaaaagaagaaa
ctgcagcaagaagacaagggagacaataaaaaatgggccgttcctgtggacatctcctca
ccatgtggcgacttctacaagcgcatccctaatccagccttcaagtatcccttcgagctg
gacgtgtttcagaagcaggctattctccgactcgaagctcatgactctgtctttgttgcg
gctcacacctcagccggcaagaccgtggtggctgaatacgcaattgcactatcccagaaa
cacatgaccaggaccatttacacatcccccatcaaggccctgtccaatcagaagttccgg
gacttcaagaacacgttcggtgatgtgggactgttgactggagatgtccagctgagccct
gaagcctcatgtctcatcatgaccactgagattttgagatctatgctctataatggctca
gaggtcattcgagatctagaatgggtcatttttgatgaggttcactatatcaatgatgca
gagaggggagtggtgtgggaggaagtgctcatcatgttgccggagcatgttagcatcatc
ctgctgagtgccacagtgccaaacgcagtggagttcagtgaatggatcgggcgtatcaag
aagcggcacatctatgtgatcagcacagttaagaggcctgttcctctagagcactatctg
tatactggcaatagcacaaagactcagaaagagctcttccttttgatggactccactgga
aactttctaactaaaggctactatgccgcagtagacgccaggaaagaacgcactagtaaa
catgcacagtcgtttggcacaaagaacgtatcacagcacaacacaacagccagtcaggat
cgagccatatggcagacgctgctgaactttctgtctcagaggcagcagactccagtggtg
gctttcacgttctctcggacacgctgtgatgaaaacgcccgctctttgacctctctggac
ctcaccagctccatagagaagaacgagatccactcgttcctgcagaagagcctgaccagg
ctgagaggaggcgatcggcagttaccgcagatccggttaatgcgcgatttgctgaagaga
gggattggtgttcaccacagtggcatcctgccaatcctgaaggagattatcgagatgctc
ttctccaaaggtttagtaaaggtgctgtttgctacagagacgttcgccatgggtgtaaac
atgcctgccagaaccgttgtgttcgacagcatccgcaaacatgacggcacaggattcaga
aacctgcttcccggtgagtacattcagatggcgggccgtgcgggcagaagaggtttggat
gctacagggaccgttatcatcctctgtaaagctggagttcatgatatgggagacctccac
gctatgatgctgggcaagccgacagtgctgcagtctcaattcagactgacctacaccatg
atcctgaatctgctgcgtgtggaggccctgagggtcaccgacatgatgaggaggagcttt
tcagagaatcacagggatacgcaggctcacgagaagagaataagtgagctgagaaacacg
ctctcctctctccctccgctggacacggaggggcagttatctgatttactgtcatattac
cacaccatcactgagctgcgcatcaccacagaggccctgcagcgagctgtgctggagtca
gtgaatggactcaaagctctatctgtgggaagggtggtaatagtgaacaacagccatcat
cacaacgctctgggagtcatcctacaggtgtccaacgatgcagtaaatcgcacgctcacc
gctctcattatctgtgagaagggtaatgaggaggcggcgggtgatgatctgactaataaa
gtcttacatcccatctacagcactacactgtttattccagagggaccctgcagtcataca
gtgcagaaactgaagctgcaagacatctctgctatcacagccaaaaccctcaaggtcatt
ccagagagaatcatcgacaactacaataaaagacagcagccacgcttcagacttgatcca
ccaggtcaggctatttcgacagcaactcaggagctcctgcgattggctgaggcaaatcca
aatggcattgcgacccttgacgctgtaaatgacctgcacctgaagggtgtggatgtggtg
gagggagtgatgaggcaacgagtgttacaggacagtctgaaagacttccactgtattcac
tcacccaccttcattgaacagtttgcgcgtgtgcaggagaggatgagtgtacaggaagag
cttgacaagcttctgttcctgatatctgatcagtcattgacactgctgcctgagtaccat
cagagaatcaaggtgttggaggcactgcagtatgtggacagcactggagcggttcagctg
aagggacgtgtggcgtgtcagatcagcagtcatgagctgttactcactgaactcctgttt
gagaacacactgagtcctctcgcccctgaggagagcgccgccctgctgtcctgcctcgtc
ttcacacaaaacacccagatagacccgcacatcaccaacacgctacaggagggcatcaat
caagtactcaatgtggcacagcacattggtgatctgcagagggaatgtgggatagctcag
actgctgaagactttgtggcccagttcaagtttggcctgactgaggttgtgtactgctgg
gcaagaggaatgccgtttgctgagatcgccgagctgacggatgtgcaggaggggacgatt
gtgcgctgtatccagaggctggacgaggtcctgaaggaagtgagacaggctgcgcgcatt
gtgggtgactctgtcctaggcagcaagatggaaagagcctctctggccatacgcagagat
attgtgttcaccgcctcgctttacacacactga
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integrated database retrieval system
