Garra rufa (doctor fish): 141333499
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Entry
141333499 CDS
T11039
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
grf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141333499
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
141333499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141333499
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
141333499
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Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
141333499
NCBI-ProteinID:
XP_073694620
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Position
4:complement(4689227..4703262)
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AA seq
553 aa
AA seq
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MADGVDHIDIYADVEEEFNQESDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPG
GSEGNKGAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIRSIGISDVLEIKFFENRAN
GQSKGFALVCVGSDSSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKNFVHSGT
QSGQMSGEGKAGPPGAGPRSGFPPGKNRGRFPTPPGPGGDRFPPGPVGPGGPPPHFPGMQ
GPPRPPSGPPGPPGPPGPPLPGQGLPPPLGGPPNRGDRPPPPVMFPGGFGQPPMGPMPPG
PPPPGYGPPPGPPPPQQGPPPPGPFPPRPPGPLGPPLGLAPPPHMQGPPPGGPPPAPHVN
PAFFPPPGNNNMQSSDSRGPPPGDPYGRPPPYDRDYGPGGRDMDSSRAPLSEAEFEEIMN
RNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHG
IESKSYGSVSSRRERSRERDHSRSRDKRHRKSRSRDRHEDYYRERSRERDRHRERERDRD
RERDREREREYRR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgttgaccacatcgatatttacgccgatgtagaagaggaatttaatcag
gaatcagattatcctgttcatgagcagattgacctgtatgatgatgtcatctcaccatct
gccaacaatggcgacgcacctgaggaccgagattacctggataatttacctgcaccggga
ggatccgaggggaacaaaggagctccgccgaatgtcgtctacacctacactggcaaaaga
atagctctgtacatcggaaacctcacatggtggaccactgatgaagatttgaccgatgct
attcgctcaatcggcatcagtgatgtgctggagatcaagttttttgaaaatcgagcaaat
ggccagtcaaaagggtttgctctggtctgcgtgggttcagactcttcgtccaggaagctg
atggatctgctgtccaagcgggagctccacggacaaaacccgatcgtcaccccttgtaac
aaacagtcgctcagccagtttgagatgcagtcgcgaaaaaattttgtccactcaggcaca
cagtccgggcagatgtccggagaaggtaaggccgggcctcctggcgcaggacctcgcagt
ggatttcctcctgggaagaatcgtgggcggtttccaaccccacctggcccgggaggagac
cgctttccccctggaccagttggacctggtgggcctccaccacatttcccaggtatgcaa
ggtccgccgcgtcctccttcaggtccacctgggcctccaggaccccctggcccccctcta
cccggacaaggtctgcctccaccactaggcggtcctccaaacagaggagatcgtcctcct
ccacctgtcatgtttcctggtgggtttggtcagcctcctatgggtccgatgcctcctggc
ccgcccccacctggatacgggcctcccccaggtccccctccacctcagcaggggccaccc
cctccgggacccttccctccacgcccacctggtcccttaggacccccgcttggccttgca
cctccaccacacatgcagggacccccgcctggaggtccaccaccggctcctcacgtcaac
ccggccttcttcccaccgcctggaaacaacaacatgcaatcgtcagacagcaggggccca
ccgccaggtgacccgtacggtcgcccgcccccatacgacagagactacggccctggtggc
agggacatggattcgtctcgcgctcctctgagcgaagcagagtttgaagagatcatgaat
cgtaacagggcgatctccagcagtgctatctcgagggcagtgtcagacgcgagtgcagct
gattacggcagtgctatagagactttggtgacggccatctctctgatcaagcagtcaaaa
gtttctgctgatgaccgctgtaaagttctcatcagctcactgcaggactgcctgcatgga
atcgagtccaaatcctatggctctgtctcaagcaggcgggaacggtccagagagagggac
cacagtcgttctcgtgacaagcgtcaccgcaagtctcgcagccgagaccgacacgaggac
tattacagggagcgcagccgcgagagggaccgtcatcgtgagcgagagcgcgaccgtgac
cgcgaaagagacagagaacgcgagcgggagtaccgacgttag
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