Garra rufa (doctor fish): 141333552
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Entry
141333552 CDS
T11039
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
grf03009
]
141333552 (utp20)
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
141333552 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Med10
Motif
Other DBs
NCBI-GeneID:
141333552
NCBI-ProteinID:
XP_073694690
LinkDB
All DBs
Position
4:7762758..7795728
Genome browser
AA seq
2783 aa
AA seq
DB search
MKLKVKPSAHKSENTYRFITFSERLAKVNIDVIHRIDRTGSYAEEVETYFYEGLLKWKDL
NLTENFKKFFQEVSSKCQSFNMLVFHQNTIVESLKTHLSATSSMAYQPLLDLVVQLARDL
QMDFYPHFCDFFKIITSILETQDTEVLEWAFTSLSYLYKFLWRMMVKDMAKIYTIYSKLL
AHKKEHIRNFAAESFSFLMRKAPDPDAIFTLMFSNLSENPQKAKGAGQLIFEMCRGVRHM
FHSCAARALPVVLKKLGPAADKDVELPWDLIKEALDHMAESSANYVEKENLLVLWDSLQD
SLKEVLGKLETSNADQANEHLERILYIYHTLVDYRKGAKITKPQSVCETLIQLLQAPGLS
CSCQRLLLQVVFALLMGENVSLPLSSILELVKTVFNSGTDRDLILTFTKEMFNMKQFEQL
VLPSLLQYLEQLFCTKDSVNQLLVLELLVGLILTKAPPPTDGSMAFEKYPLVFNGQTVRS
TGPEGDQTVSVPQQILSLINIPADQPLSDLSPPWAALMLLPHVRPLEASAVIPVVTALLN
RLLQEVCSETLGRGGLFVARQALSTLLSFKEMAALQSLLPTELVRNVIEKHPTDLSALLL
GDLYYTRLALNGCSAELSHDSLLELYQILHSNFSSNISKIRLLTLRIMSNFEADLPKPTE
GEESSDVQTVFAVCLQAEQVPATVQDYREKLLHLRKLRHDLVQPCLPKGDFHEVPLRYLI
AMLFINFRPLWDPVMELLVNHAKEMDNKSFWKVYYEHVEMVAALAEEELEPDDDYEEGGG
EQQAAKQLRGPGTCVIESGDVGVLFLEELDHVLNPTDRTDFTNFRSLLWQAMAKFPDRVE
PRSRELSPLLLRFVSNVFYPADLQVAPTQNLLKRKSDESSEQEMGEEVVADMEEDEEKEE
DSKQPRKKMPRKAAATQLIAYLKVFSKFNNPKALYMEPKLRELYTQLLCHKDQQIQKIAL
DCLMTYKDPNILPYKENLERLLDDKHFKDEIAHFNITEEGAVVLPSHRPKLIPMLMRILY
GRMRTRVGSKFQGKGNTISRSSIVLRFLAACQPEEMGMFIDLLLEPVCHHAEGGCLAAVE
RAVAETNMSAVLPVGRQHGLLNTMEMLIQEMGHLMHLYLPKILQMLLCITASVSHILDHR
EQLRPGFLNPLKNLRRLGILRIQDFFDGFESYSFTADEIDAVFQAVVWPKVCLLSTESPY
APTPLLKVIFVWSQNPRYFPLLAKQRPGHPEYDILRNVFALFFSKNLSAVTTAMVVDIAE
TLLTTPDYEPKENESVLVVNDCVIPEPHQTCDESDSLTIGCRLLLPHIPALLKYLSRVVC
NSERLKKTQFKAQVKKELNILSKISRFVTEKEQSSTLIGLLLPYLHKLRTAQETQLDILG
TVKNLLRQCSDPNMFLKPLSKLFSIIQDRIPRQALCEAFQILSEMDSELTYITDVVVELN
AFDSRHLNEIYFDVRLLAFQKVIKHIKEMSTLDMRYLNAIMHNCFHSIEIGDMSLADSAT
MCLSAIITQLSEIGCPEVEYREIVQSTILVAIQKGLKSKTESIRNDYTTVLACLVKVFPN
QKDFRELVQLTNYTDLESDFFEHMKHIQVYRRGRALRKFARQLTEGKIVMSSRSMQNYIM
PYAMIILVDEKLLKYEPMKTAAVEVIGAVCRRFTWSKYLYYLKHFVHCLQTGIIEQKLAV
SLLLTVLDAFHFDHETLSKEIEAAKNKKTGEPSVVMEEAEDVAGETMDTDESDAEDAMET
EEAGAAVSTPTDAETEGPKKTKEGKENQMNKVPLVVNSGLPQSQRDLEALVSTIHHTVTQ
TVLPKLHKCLTAKVKRDDEHKAVKSKDVKDEEVVRVPIAFAMVQLMKSLPKEVMEANLPG
IFLKVCVHLRSRFQEIRDIARSTLVKIIQTLGHQYLHYLLSEMQTVLVKGYQVHVLTFTV
YHLLSILKPSLTGGDLDPCMDMLISIFNNELFGAVAEEKDIKGIVSKVLEARHSKSSDSY
ELLAQFCSQERVIHLILPLKEMLENTASLKVSRRVNSVLQKIVAGLLLNKSMSPQSILLL
CHGLVSESLPLITSKNKEKPLPPPDPRLPPPSCLLLPATPKRGGAKAVINNKTNMHILVG
AGLSLLYCSLKSSKINSSVPSVKEMLDPFVSLLLDCLNSMHVKVITEALQTFIWILKFPL
PAVEQNYEQLTKQLFVLLKDYSKAGAGRGENFHLVQNCFKAITVLVSSTKKQLTETQLQV
LLGYAEEDIYDHSRQATAFGLLRAILSKKLVVREMEDVMRKVAKFAIDGSNEQVRMRCRQ
IYLKYLMDYPLGKKLKNHFEFIVAQLTYEYDTGRQSALELMAFLFQQFPKPLLQGNCGLF
FVPLSLAMLNDDSATCKKMAALAIKSLLNRVDLQVQNSMFNLVNTWLTNEKMALRRLGAQ
VCGLFVEVEGEKFSRRLDALIPLIEKEIHTSNFEDIEEEEDEKAADRLLFCYLTLIVKLI
KECRFLELHKPADLLNSIWSHIESHLRYPHFWVWVTASQIFGLLFAAHKPEELLASCRSQ
EKTSKTKQPVASAFLMDNLYQKMRELVLSCCYQMQSKFIDVTAGEQVVKNLIYVAKVIYL
MSPESDTANPAEEQEGEEKEMTDNIKENGEEEEEDKKQKNKPPSLLWVMKKLSLQARREA
ADTPKVPLKRICVFKFLGAIAVDLGKDRLGPYLTTVIAPLYRELDSTYADQDPTLKNLAQ
ELIELLKKLVGLEQFSMAFAAVQKEANQRRTSRKIAKAVQAVKNPDLAARQKIKKQLKKN
EAKKRKITFVRTGHKAKKHKGNH
NT seq
8352 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaaagtcaagccttcggctcataaatcagaaaacacctaccgctttatcact
ttttctgagaggctcgcaaaagtaaacatcgatgtcattcatcgcattgacaggactgga
agttatgcagaggaggtagaaacctatttttatgaaggcctattaaaatggaaagacctg
aatttgacagaaaacttcaagaagtttttccaagaggtgtcaagcaaatgtcagtctttc
aacatgctggtgtttcaccaaaacactatcgtggaaagtctgaaaacccacctgtcagcg
acgagcagcatggcttaccagcctcttctagatcttgtagttcagttggctcgtgatctc
cagatggacttttaccctcacttctgcgacttcttcaagatcatcacatctatactggaa
acacaagacactgaggtgttggaatgggccttcacaagtctgtcatacctgtacaaattc
ctgtggaggatgatggtgaaggatatggccaagatttacactatttacagtaaactcctg
gcgcacaagaaggaacacatccgcaactttgcagctgagagcttctctttcttgatgaga
aaggcgcctgatcctgatgctatcttcacgctcatgttctccaacctgtctgagaaccct
cagaaggccaaaggagcaggtcagctgatctttgagatgtgtcgaggagtccgtcacatg
ttccactcctgtgccgctagggctcttccggtggtgttaaagaaactaggcccagcagct
gataaggatgtggagttaccttgggatttaattaaggaagctctggatcatatggctgag
tcttcagccaactatgttgagaaagaaaacctgctggtcctgtgggactccttacaagac
tctctaaaagaagttcttggaaagttagagacaagcaatgccgatcaggctaatgagcac
ctggagaggattctgtacatctaccacacacttgtggattatcgcaaaggagcaaagatc
acaaaaccacaatctgtttgtgagacacttattcagctacttcaggctccaggactgtcc
tgttcctgccagaggctgcttttacaagtggtctttgctctgttgatgggagaaaatgta
tcattacctctcagcagcatccttgagctagtgaaaacggttttcaatagcggcacggac
agagacctcatattaacttttaccaaagagatgtttaacatgaaacagtttgagcagttg
gtcttgcccagtttgctgcagtatctggagcagctcttctgcacaaaggactctgtaaac
caactgctggtactggagcttctggttggtttgattctgaccaaagctccgcccccgact
gatggctccatggcttttgagaagtacccattggtcttcaatggacagactgtcaggtca
actggacctgaaggagaccagacagtctctgttccccagcagattctttctctcataaac
attcctgccgatcagccgctctctgacctttcccctccctgggctgcactgatgcttctt
ccgcatgtcaggccattagaagcatcagctgttataccagtcgtcactgcgctactaaac
agattgctgcaggaggtttgcagtgagactctggggagaggagggctatttgtagcccga
caggctttaagcaccctgctcagcttcaaggagatggcagcattacagtcactcctgcct
acagagttggtcagaaacgtcatcgagaaacaccccactgatctttcagcgctgctgtta
ggcgatctgtactacaccagactggcactcaatggctgctcggctgagctgtcccatgat
tctttgctcgagttgtaccagatactacattccaatttttcttccaacatttctaagatt
cgtttgctgaccctccgaattatgtcaaactttgaggctgatcttcctaaaccaacagag
ggagaggagagctcagatgtgcagacggtgtttgccgtgtgtctgcaggcagagcaggtc
ccggccacagtgcaggactacagggagaaactgctacatcttcgtaaactccgtcatgac
ctggtgcagccctgtctgcccaagggagatttccatgaggttcctcttcgttatctcatt
gcaatgctgtttatcaatttccgacctctctgggatccagttatggagctgttggtgaac
catgcaaaagaaatggacaacaagtcattctggaaggtctattatgaacatgtggagatg
gttgctgctctagctgaggaagagcttgagccagatgatgactatgaggagggaggcgga
gaacaacaagcagcaaagcagctccgaggtccaggcacctgcgtgattgaaagcggggat
gtgggagttttgtttctggaagagctggaccacgtactgaatcccactgaccggacggac
ttcacaaacttccgcagtctgctttggcaagcaatggccaagtttcccgacagagtggag
ccacgtagccgagagctcagcccattgctgctgcgctttgtcagtaacgtgttctaccca
gctgacctgcaggtggctcccacacagaacctcctgaagaggaagagcgacgagtcatca
gagcaggaaatgggtgaagaggtagttgcagacatggaagaagatgaagaaaaggaagag
gattccaaacaaccaagaaagaagatgcctagaaaagcagccgccacgcagctcattgca
tacttgaaggtcttttccaaattcaacaacccaaaagctttatatatggagccaaaacta
cgtgaactgtacacccagcttttgtgccataaagaccaacaaatccagaaaatagcactg
gattgtttgatgacatacaaagacccgaacattcttccttacaaagagaatctggagaga
cttctggatgacaagcattttaaagatgagattgctcatttcaacatcacagaggaagga
gccgtggtacttccgtcacacagacccaaacttattccaatgctaatgaggatactatat
gggcgaatgcgcactagggttggcagtaagttccagggtaaggggaacacaatttcacgc
tcctccatagtgctgcgtttcctggcagcctgtcagccagaggagatgggcatgtttata
gatcttctgctggagcctgtttgtcatcatgctgaaggaggatgtctggcagcagtagaa
cgagccgtagccgagacgaacatgtctgctgttctccctgtgggtcgccaacacggcctg
ctcaacaccatggaaatgctcatccaggaaatgggccatctcatgcacctctatctgccc
aaaatcctgcagatgctgctgtgtatcacagcctcagtgtcacacatactggatcacaga
gagcagctcaggccaggtttcctcaatcctctgaagaacttgcggcgtctggggattcta
cgcattcaagacttctttgatggctttgagtcttacagctttactgcagatgagattgat
gcagtgtttcaagctgtggtgtggcctaaggtgtgtcttctatccactgaaagcccgtat
gcaccaacaccccttctgaaagtcatctttgtgtggagccaaaatcctagatatttccct
ttgcttgcaaagcagagaccgggccaccctgaatatgacatcctgcgtaatgtattcgct
ttgtttttctccaaaaacctgtctgccgtcacgacggccatggtggtggatatagccgag
accttgctgaccactccagactatgaacccaaggagaatgaatctgtgctggttgtgaac
gactgtgtgatccccgaaccccatcagacctgtgatgaatcagattctttgactatcggc
tgccgtctgctccttcctcacatcccagcactgctgaagtacctcagcagagtcgtgtgt
aactctgaacgcctcaagaagacgcaattcaaagctcaagtcaagaaagagctcaacatc
ctctcaaagatcagtagatttgtgactgaaaaagaacagagttcaacactcatcggtttg
cttctgccttaccttcacaaactcaggactgctcaggaaacacagctggacatccttggc
acggtgaagaacctgctgagacaatgttcagatcccaacatgttcctcaagcctctcagc
aagcttttctccatcatccaagacagaattccacgccaagctctgtgtgaagcatttcag
attctgtcagagatggacagtgaactgacatacatcacagatgtcgtggttgagctcaac
gcgtttgatagccgccatctgaatgagatttactttgacgtgcgtctcttggccttccag
aaggtcataaagcatattaaagagatgagcactttggatatgagatacctgaatgccatc
atgcacaactgtttccactctatagagatcggcgacatgtctttggcagacagtgccacc
atgtgtttgtcagccataataacgcagctctctgaaattggatgcccagaggtggaatac
agggagattgtgcagagcaccatattggttgcaattcaaaagggtttgaagagcaagact
gagagtatacgaaatgattacactacagttctggcctgcctggtgaaagttttccccaac
caaaaggatttccgtgaactggtgcagctgacgaactataccgatctcgagtcagatttc
tttgagcatatgaagcacatacaggtttacagaaggggtcgagcactaaggaagttcgcc
cggcagctgaccgagggcaagattgtgatgtcctcacgctccatgcagaattacatcatg
ccctacgccatgatcattctagttgacgaaaaactgctgaagtacgaacccatgaaaaca
gccgctgtggaagttattggtgctgtttgcagacgctttacctggtcgaagtacttgtat
tacctcaaacacttcgtccattgtttacaaaccggaataattgagcagaaactggctgtc
agcttgttgctgactgttcttgatgcgttccactttgaccatgagactctcagtaaagaa
atcgaggcagccaagaacaaaaagacaggcgagcccagtgttgtgatggaagaagctgaa
gacgtggcaggggaaaccatggacacagatgaaagtgatgctgaagatgccatggaaacc
gaagaggctggagcagccgtttccacgccaacagatgctgagacggaaggccccaaaaaa
acaaaagaaggcaaagagaatcagatgaataaagttcctcttgtcgtcaacagtggtctt
ccacagagtcaacgggatttagaggcgcttgtttccaccattcatcacacggtcactcag
accgtcctgcctaaacttcacaagtgcctcacagcgaaggttaaacgagatgatgagcac
aaggccgtgaagtctaaggatgtgaaagatgaagaagtggtcagggtacctattgcattc
gccatggttcagctcatgaagtctctgccaaaggaagtcatggaagccaacttgcctggc
atcttcctgaaagtgtgcgtccacctgaggagccgtttccaggagatccgtgatatcgct
cgaagcactttggtgaagatcatacagacgcttgggcatcagtatctacattatctgctc
agcgagatgcaaacggtcttagtgaagggctatcaggtccatgttttgaccttcaccgtg
taccatttgctctccatcctaaaaccatccttgaccggaggggatcttgacccatgcatg
gacatgctcatctcgatcttcaacaatgagttatttggggctgtagccgaggagaaagac
atcaaaggaattgtttccaaagtgttggaggcccgtcacagcaagagctctgattcgtac
gagctcctcgcccagttctgcagtcaggagcgcgtcattcacctcatcctgccactcaaa
gagatgctggaaaacacagccagtctgaaggtgtcgaggcgagtgaattctgtgcttcaa
aaaattgtggcaggactcttacttaataagagcatgagccctcagtccatcctactgctc
tgccacggactcgtcagtgagagtctgccgctcattaccagcaaaaacaaagagaagcca
cttccacctccagatcctcgcctgcctccgccaagctgtttactgctgcctgccactcct
aagagaggaggcgcaaaagctgtcattaacaacaaaaccaacatgcacatcctagtggga
gcaggtctaagtttgctttactgcagtctgaagagttcaaagatcaactcatctgttccg
tcagtaaaggagatgctggatccttttgtatctcttctcctggattgtcttaactccatg
catgtaaaggtgattacagaggctctgcagacctttatctggatcctgaagtttcctctg
ccggcggtggagcagaattacgaacagctgaccaagcagctctttgtcctgctgaaggac
tactctaaagctggagccggccgtggagagaacttccacctggttcagaactgctttaag
gccataactgttttggtgagcagcacgaagaagcagttaaccgaaacacagctgcaagtg
cttctgggatatgctgaggaggacatttatgatcactcgaggcaagccaccgcattcggc
ctcctgagggcgattctctccaagaaactggtggtgcgtgagatggaggatgttatgaga
aaagtggccaagtttgccatcgacgggtcaaacgaacaggtccgcatgcgctgcagacag
atctacctgaagtacctgatggactatccactgggcaaaaaactgaagaatcattttgaa
ttcatagttgctcagcttacttacgaatatgacactgggagacagtctgccctggagctg
atggccttccttttccagcaatttcctaagcctctcttgcaagggaactgtggtttgttc
tttgtgcctttgtcattggccatgttaaacgatgattcagcaacctgtaagaaaatggca
gccctggctattaagtctcttctgaatcgggtggatttgcaggttcaaaattcgatgttt
aacctggttaacacctggcttacaaacgagaagatggccctgcggcgactcggagctcag
gtttgtgggctgtttgtagaagttgaaggggaaaaattcagccggagactggatgccctc
atacctctcatagagaaagagatccacacttccaacttcgaggacattgaggaagaggag
gatgagaaggctgcagacagactgctgttctgttacctgacgctcatcgtcaaactcatc
aaagaatgcaggtttttggagctccacaaacccgcagacctgctcaacagcatctggagt
catattgaatcccatctgcgttaccctcatttctgggtctgggtgacagcctctcagatc
tttggtttgctgtttgctgctcataaaccagaggagctcttggcctcatgcaggtctcag
gagaaaacgagtaaaaccaaacagcctgtggccagcgctttcctcatggacaacctgtat
cagaagatgagagagctggtcctgtcctgctgttaccaaatgcagtctaagttcatcgat
gttactgctggagagcaggtggtgaagaacttgatttacgtggccaaggtgatttacctc
atgtcaccagagtctgataccgcaaatccagctgaagaacaggagggtgaggagaaagaa
atgacagataacataaaggagaatggggaggaagaagaggaagacaagaagcagaagaac
aagcctccatctctcttatgggtgatgaagaagctttcattacaggccagaagagaagca
gcagacacaccgaaagtgcctttgaagagaatttgtgtttttaaattcttgggagccata
gctgtggatctcggaaaagatcgacttggaccgtatctgaccactgtcatcgcacctctc
tacagggagctggacagcacatatgcagaccaagacccaacgctgaagaatctggcccag
gagttgatcgagttgttgaagaagctggtcggtcttgagcaattctctatggcttttgcc
gcagtgcagaaagaagccaatcagagacgaacttcacgcaagatagccaaagccgtgcag
gctgttaaaaatcctgaccttgctgcccgacagaagatcaagaagcagttaaagaaaaat
gaggccaaaaagcggaaaatcacatttgtgcgtacaggacataaagcgaagaaacataaa
ggcaatcactaa
DBGET
integrated database retrieval system
