Garra rufa (doctor fish): 141333580
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Entry
141333580 CDS
T11039
Symbol
shank3b
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 3 isoform X1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
grf Garra rufa (doctor fish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
SAM_1
Ank
Ank_4
SAM_2
SH3_2
SH3_9
PDZ_6
Ank_5
PDZ
SH3_1
FERM_f0
Motif
Other DBs
NCBI-GeneID:
141333580
NCBI-ProteinID:
XP_073694728
LinkDB
All DBs
Position
4:complement(10695526..10732233)
Genome browser
AA seq
1644 aa
AA seq
DB search
MPISPPADGKHEALDRPRQQHTPTNGNHGDDSIRASPGSKSSSEPMEDLHGNAVVIRIGI
PDLQQTKCLRLDLEAPVWVCKQQVLVTLTQSLTDVLNYGLYLPAFNGRAGKFLDEERLLR
EYPLPTITPVPYLEFRYKRRVYTQSHVDDKQLAKLHTKANLKKFMEYVQQRCVDKVCRFL
EKGLDPNFHDSESGESPLTLVAQLDTCADLIKVLRSGGAHLDFRTRDGLTALHKAVQTHN
HVALTTLLDLGASPDYKDSRGLTPLYHSAMVGGDPYCCELLLYDHAQLGYSDENGWQEIH
QACRHGNVQHLEHLLFYGAEMSAQNASGNTALHLCALYNQEGCARVLLFRGANKEIKNYN
NQTAFQVAIIAGNFDLAEIIKIHKTSDVVPFRETPSYSSRRRAVCVSPRRSLMRSASDNA
LDESLPAPSPAPSLRSLPPLEPDDTTPSQRSPQAAHTHTRSLRRHTRSGGHLSPGSPVQR
EPSPPAVSRGPKRRLYSAVPGRTFIAVSSHTPQGEGEITLNRGERVKVLSIGEGGFWEGS
VKGRTGWFPAHCVEEVQMRQYDPRLETREDRTKRLFRHYTVGSYDNYTSYSDYVIEEKSA
TLQKRDSEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDLEGVAWRAGLRTGDFLIE
VNGVSVVKVGHRQVVSLIRQGGSRLVMKVVSVTRKPDTGDVVRKKAPPPPKRDPSTSLTL
RSKSMTAELEELASRRRRGEKLDEMLSSPKEPVVVMRQRPADTDSRAATVKQRPTSRRIT
QAEINSLLERQGLPIGSGVSLAVDKSHMQLPRGMSRTKSFGAPEDDRISALIGEHRFPRS
SSMTDSFRQDSIPPPPQTAPPPPPTPYFLDSGPPPSFLPPPPPSRAANQSRSSFRPGAEP
KLHGPVTTDRQRKTRSMIILQDTTHLPVEPAPIARPQTPTSGAVPPERGRRRGPPVENPY
ANVGRLSAVYTPTKPQRRKSPLVKQGQVEEGAAAQSSRDPSPLGGSRIPHSSRAEQFQQQ
VLSERARITPPGARRRPSVFLSVEGGATEPQTTPLLSQSHSVDELAELPPPAPMLSPGPP
PGGTTFIHPLTGRPLDPSSPLALALAARERALSGRNTPTPTPSPTPSPTQGRAVERPETE
GGATPPAPLEAPPSNSWRDEPVSITETASQVTSGSPGSGRSLEEALVPPSVQGVQPALMD
TEHTPPAVPPTLPSPAPTLSNLTARSLTMSSEEDAEPYTVTLPPALLSSSDEETREELRK
IGLVPPPQPFANGLLIKEAPKATLSISPSGSRPSIAKTSSGKASDSTADSGVEDPHMETT
STVSTVSSMSTLSSESTDSAHASKPRSGVGRGRPAHLRDPLLKQSSDSELLPHPPSTGPS
RPRYLFQRRSKLWGEEPRAQMGGSDESRPAAMGAELLSKDTHSLGEEPPMGAPLDPGRRS
PVGGARCEENGGESKSLFSSLGELHTISQRSYGTTFTIRPGSRYPVTRRTPSPGATPERS
EPLGPVRTFGPHHHHHTILKSSSLSLPQEPKEVRFVMRSASARARSRSPSPSPCASPCPS
PVLGAPLLALRPFRQRPLALWSKYDVGEWLESVGLGEHRARFLEHEIEGAHLPALTKDDL
AELGVTRVGHRMNIERALKQLLDS
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcagtccacctgccgacggcaaacatgaggctctcgaccggccgcggcaacaa
cacacccctaccaacggtaaccacggagatgacagcattcgggcctctcctgggagtaaa
tcttcctccgaacctatggaggatctccacggaaatgcagttgtcatacgcatcggaatc
cctgatctgcagcaaacgaaatgcctgcgattggaccttgaggctccagtgtgggtttgt
aagcagcaagttctggtcactctgacacaaagcctgaccgatgtgcttaactatggcctc
tacctccctgcctttaacgggcgtgccggaaagttcctcgatgaggagagattgctcagg
gagtatcctctccctacgatcacacctgtaccatacctagagttccgttacaagaggcgt
gtttacactcagagccatgtagatgacaagcaactggccaaactacataccaaggccaac
ctaaagaagtttatggagtatgttcaacaaaggtgtgtggacaaggtctgcaggtttctg
gagaaagggctggaccccaactttcacgattctgagagtggggaatctcctctcactctc
gtggcccagctggacacttgtgccgatctgattaaggtgttgaggagcggaggagcccat
ctggacttcagaaccagagacggcctgacggcgctgcacaaagcggtccaaacgcacaac
catgtagcattgactacattgttggatctgggggcgtctccagactataaggacagtcgt
gggcttacccccctctatcacagtgccatggttgggggagatccgtactgctgcgagctg
ctgctctacgatcacgcccagctgggctacagcgatgagaacggctggcaggagatccat
caggcttgtcgtcatggaaacgtgcagcaccttgagcacctgttattctatggagcggaa
atgagcgctcagaatgcctcaggaaacacagcactacacctgtgtgccctctacaaccag
gaaggctgtgctagagttctcctgtttcgaggagcaaataaagaaatcaagaactacaac
aaccaaacagcatttcaggttgctatcatcgcagggaactttgacctggcagaaatcatc
aagattcataaaacctcagatgttgtgcctttcagggagaccccttcgtattcgtctcgg
cggcgcgcggtctgcgtatccccacgtcgctctcttatgcgatcggccagtgataacgct
ctagatgagagtctgccagctccctctccggccccctcccttcgcagcctacccccgctg
gagcctgacgacaccaccccgtcccagcgcagccctcaggccgctcacactcacacgcgc
agcctcaggagacacacccgctcaggaggacacctcagccctggcagtcctgtacagaga
gagccgagtcctccagccgtgtctcgagggcccaagcgacggctgtacagtgcggtgccc
ggtcgaaccttcatcgctgtcagctcccacactccacagggcgagggtgagatcacactc
aaccgaggagagagggtcaaagtgctaagcataggtgaaggtggattctgggaaggctcg
gttaaaggacgaactggctggtttcctgctcactgtgtagaggaagtccagatgagacaa
tatgacccacgactcgagacaagagaggatcgcaccaagagactttttaggcactacact
gttggctcctacgacaactatacctcttacagtgattatgttatagaagaaaaaagtgca
accctgcagaagagagacagcgaaggattcggcttcgtgcttcgaggagctaaagctgag
acacccatagaagagttcacacctactcctgcttttcctgccctgcaatacttggagtct
gtggacctggaaggggtggcatggagggcagggttaaggacgggagatttcctcatagag
gtaaatggggtaagcgtagtaaaggtgggacataggcaggtggtatcgctgattcggcaa
ggtggaagtcggctagtaatgaaggttgtgtctgtcacacgcaaacctgacactggagac
gttgtccgcaagaaagccccaccacctcccaagagagacccaagcaccagcctgaccctg
cgctcaaaaagcatgactgccgaactggaggagctggcgtcaaggagaaggaggggagag
aagttggatgagatgttgagttcgcccaaagaaccggttgtagtgatgaggcaacgtcct
gcagatacggactccagagcagccactgtgaaacagagaccaacaagccgccgtatcaca
caggctgagatcaattctctgttagagaggcagggtttgccaataggttcaggagtgtcc
ttggctgtggacaaaagtcacatgcagctgcctcggggaatgtcaaggaccaagtcattt
ggtgctcctgaagatgacagaatctcagccctgattggagagcatcgctttccgagaagc
tcctcaatgactgacagctttagacaagatagtattcctccccctccacagacagctcct
ccaccacctccaacgccctacttcctagattcagggccaccaccatcctttcttccacct
ccgcccccttctcgcgctgccaaccagagccgttcgagcttccgcccaggggcagagccc
aaactccacggcccagtcacaacagaccgccagcgaaaaacacgctccatgatcattctt
caggacaccacccatttgccagtggagcctgcccctattgcaagaccacaaacgcctacc
tccggagctgttcctcctgaacgtggtcgaaggcgtggaccacctgtggagaatccctat
gctaatgtaggtcgtctaagtgcggtctatactcccaccaagccccagcgtagaaagagt
ccactagtcaaacaaggacaagttgaggagggagccgctgctcagagtagtagagacccc
tctcctttgggagggtcacggattccccacagtagtcgagcagagcagttccaacagcag
gttctctctgagcgagctagaatcacgccgccaggggcccgacgcaggccaagcgttttt
ctatctgtagaagggggtgcaacggagccgcagacaaccccgttactttctcagtctcac
tcagtggatgagttggccgagttgcctccgcctgcaccaatgctttctcctggcccacca
ccagggggcaccactttcatacaccctcttacaggtcgaccactggatccttcctcacct
ctagcgcttgcactggctgcacgagaacgtgcccttagtggccggaatacacccactcct
acgccatcgcctacaccttcgcccacccaaggtcgagccgtggaaaggccagagacagaa
ggaggagccacaccacctgctcctcttgaggctcctccatctaactcctggagagatgaa
ccggtcagcatcacagaaacggcaagccaggtgactagcggtagccctgggtctggacga
agcctggaagaggcacttgtcccacccagcgtgcaaggtgtccaacctgcgctgatggat
acagaacataccccaccggcagtcccgcccactctaccttcccctgcccctaccctgtca
aatctgactgctcgaagtctgactatgagctccgaggaggatgcagagccttacacagtg
acacttccccctgcgttgctctcgtctagtgatgaggaaaccagagaggagcttcggaag
ataggtcttgtgccaccccctcaaccctttgctaatggccttctaattaaagaagcaccc
aaagccactttaagcatttcacctagcggatcacgcccatcgattgcaaagacctcctct
gggaaagcaagcgattctacggcagactctggggttgaagacccacacatggagaccacc
agtactgtttccacagtctccagcatgtccactttgtcttcagagagcacagactccgct
catgctagcaaaccacgttctggggtggggcgtggtcgccccgcccatctcagggaccca
ctgcttaaacagtcatcggacagtgagctgcttccacacccacccagcacaggccccagc
cgtccacgctacctattccaaagacgttccaaactctggggggaggagccccgggcccaa
atgggtgggtctgatgaaagtcggcctgctgctatgggggcggagttgctaagcaaagac
actcattcactgggggaggagccaccaatgggagcgcctcttgaccctggcaggagatca
cctgtgggaggtgccagatgtgaggagaatggaggagagagtaaatcactctttagtagt
ttaggggagcttcacaccatctctcagcggagttacggcaccaccttcacaatccggcct
ggcagccgatacccagtgacccgcaggactccgagccctggagccaccccagaacggagt
gaaccgctggggcctgtccgtacattcggcccccatcaccaccatcacacaatcctcaag
tcttctagcctaagtttgccccaggaacccaaggaggtgcgtttcgtcatgaggagtgcc
agcgctcgagcccgcagccgttctccatccccttctccgtgtgcctccccctgcccttca
ccggtactgggagcccctctcctggccctgcggcctttcagacagcgccccctagcactg
tggagtaagtatgacgttggagagtggctagagagtgtgggacttggagaacatcgtgcc
cgctttttggagcacgagattgaaggcgcccacctgcctgcactgaccaaggacgatctg
gcagagttaggggtgacacgggtgggacaccgaatgaacatcgagcgtgcactgaagcag
ttgctggatagttga
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integrated database retrieval system
